Innotargets: Introduction to Metabolic Modelling
DRAFT/UNDER CONSTRUCTION - STUDENTS PLEASE IGNORE
Barcelona 2023
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Oliver Ebenhoeh (OE: Heinrich Heine University, Dusseldorf)
- Yanica Said (YS: Oxford Brookes University)
- Dipali Singh (DS: Quadram Institute, Norwich)
Guest Speaker ??
- TBA ??
Reading List ??
- Suggestions ?
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Tuesday |
AM |
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30/05/23 |
09:00 |
Arrival, Admin & Registration Hotel check-in etc |
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PM |
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13:00 |
Lunch |
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14:00 |
Welcome and introduction to the course - why do modelling? |
MP |
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Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
YS |
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Tea/coffee |
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Lecture 2: Python and computational representation of metabolic networks. |
MP |
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P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
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Close |
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Wednesday |
AM |
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09:00 |
P2. Python and ScrumPy |
All |
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Lecture 3: Null space, subsets and elementary modes |
OE |
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11:00 |
Break |
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P3. Null space, subsets and elementary modes |
All |
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13:00 |
Lunch |
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PM |
14:00 |
Guest lecture - Synthetic Biology: Uncovering principles of biological design applying math and experiments. |
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Dr. Rodriguez-Caso |
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15:00 |
Depart social activity |
All |
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Thursday |
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Lecture 4. Linear programming and Flux Balance Analysis |
YS |
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Lecture 5: S. typhim model |
MP |
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Break |
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S.typhim prac |
All |
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Lunch |
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Lecture 6: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
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Friday |
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Lecture 7: construction and validation |
DS |
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Finish practicals/General discussion/Something else |
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13:00 |
Lunch |
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Go home! |
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