Innotargets: Introduction to Metabolic Modelling
DRAFT/UNDER CONSTRUCTION - STUDENTS PLEASE IGNORE
Barcelona 2023
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Oliver Ebenhoeh (OE: Heinrich Heine University, Dusseldorf)
- Yanica Said (YS: Oxford Brookes University)
- Dipali Singh (DS: Quadram Institute, Norwich)
- Hester Chapman (HC: University of Nottingham)
Guest Speaker ??
- TBA ??
Reading List ??
- Suggestions ?
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Tuesday |
AM |
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03/04/22 |
09:00 |
Arrival, Admin & Registration |
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PM |
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12:00 |
Lunch |
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13:00 |
Welcome and introduction to the course. Outline of the week. |
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MP et al |
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Lecture 1: Who? What? |
??? |
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Lecture 2: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
DS |
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Tea/coffee |
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Lecture 3: Python and computational representation of metabolic networks. |
MP |
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P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
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Close |
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Wednesday |
AM |
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09:00 |
P2. Python and ScrumPy |
All |
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Lecture 4: Null space, subsets and elementary modes |
MP |
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11:00 |
Break |
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P3. Null space, subsets and elementary modes |
All |
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13:00 |
Lunch + Social Acitivity - visit to the Sagrada Familia |
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PM |
Lecture 5. Biotechnological applications of elementary modes analysis |
DF |
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P4. Elementary Modes of the Woods-Ljungdahl Pathway |
All |
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Thursday |
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09:00 |
Lecture 6: Linear programming and Flux Balance Analysis |
MP |
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Lecture 7 : Validation and construction of models |
DS |
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11:00 |
Break |
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Lecture 8: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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13:00 |
Lunch |
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PM |
Lecture 9: Phaeodactylum tricornutm for biofuel synthesis |
DS |
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P6. Identifying pathways for TAG synthesis in P. tricornutm |
All |
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16:45 |
close |
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