Innotargets: Introduction to Metabolic Modelling
DRAFT/UNDER CONSTRUCTION - STUDENTS PLEASE IGNORE
Barcelona 2023
Tutors
- Mark Poolman (MP: Oxford Brookes University)
- Oliver Ebenhoeh (OE: Heinrich Heine University, Dusseldorf)
- Yanica Said (YS: Oxford Brookes University)
- Dipali Singh (DS: Quadram Institute, Norwich)
- Hester Chapman (HC: University of Nottingham)
Guest Speaker ??
- TBA ??
Reading List ??
- Suggestions ?
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Tuesday |
AM |
|
|
|
30/05/23 |
09:00 ?? |
Arrival, Admin & Registration (timing TBC) |
|
|
|
0X:YZ |
? Welcome and introduction to the course. Outline of the week. ? |
|
|
|
PM |
|
|
|
|
12:00?? |
Lunch |
|
|
|
13:00 |
Welcome and introduction to the course. Outline of the week. |
|
MP et al |
|
|
Lecture 1: Who? What? Guest Speaker? |
??? |
|
|
|
Lecture 2: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
DS |
|
|
|
Tea/coffee |
|
|
|
|
Lecture 3: Python and computational representation of metabolic networks. |
MP |
|
|
|
P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
All |
|
|
Close |
|
|
Wednesday |
AM |
|
|
|
|
09:00 |
P2. Python and ScrumPy |
All |
|
|
|
Lecture 4: Null space, subsets and elementary modes |
MP |
|
|
11:00 |
Break |
|
|
|
|
P3. Null space, subsets and elementary modes |
All |
|
|
13:00 |
Lunch |
|
|
|
PM |
Lecture 5. Biotechnological applications of elementary modes analysis |
DF |
|
|
15:00 |
Depart social activity |
All |
|
Thursday |
|
|
|
|
|
09:00 |
Lecture 6: Linear programming and Flux Balance Analysis |
MP |
|
|
|
Lecture 7 : Validation and construction of models |
DS |
|
|
11:00 |
Break |
|
|
|
|
Lecture 8: Determination of minimal media requirements for Campylobacter jejuni |
DS |
|
|
|
P5: Determination of minimal media requirements for Campylobacter jejuni |
DS |
|
|
13:00 |
Lunch |
|
|
|
PM |
Lecture 9: ??? staph epi ?? |
DS |
|
|
|
P6. Identifying pathways for TAG synthesis in P. tricornutm |
All |
|
|
16:45 |
close |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|