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⇤ ← Revision 1 as of 2014-12-03 12:31:38
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Size: 26625
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== Course Plan and Resources Index == ||'''Day'''||'''Time''' ||'''Activity''' ||'''Resources'''||'''Who''' || ||Mon 15|| 13:30 ||[[Meetings/Delhi2012/Lectures/Session1|Session 1]]: Introduction to metabolic modelling. Mathematical representation of metabolic networks. Null space and its significance.|| A link.||David Fell; Mark Poolman || ||Mon 15|| PM ||[[Meetings/Delhi2012/Practicals/Practical_1|Practical 1]]: Familiarisation with pathway and enzyme databases. || ||Hassan Hartman || ||Tue 16|| AM ||[[Meetings/Delhi2012/Lectures/Session2|Session 2]]: Applications of elementary modes to real systems.|| ||David Fell; Sudip Kundu || ||Tue 16|| PM ||[[Meetings/Delhi2012/Practicals/Practical_2|Practical 2]]: Brief Python introduction; Null space and elementary modes analysis with {{{ScrumPy}}}|| ||Hassan Hartman; Sudip Kundu || ||Wed 17|| AM ||[[Meetings/Delhi2012/Lectures/Session3|Session 3]]: Linear Programming and Flux Balance Analysis. Building genome-scale metabolic models: data sources and issues.|| ||Mark Poolman; Oliver Ebenhoeh || ||Wed 17|| PM ||[[Meetings/Delhi2012/Practicals/Practical_3|Practical 3]]: Introduction to linear programming and Flux Balance Analysis with {{{ScrumPy}}}|| ||Hassan Hartman; Sudip Kundu || ||Thu 18|| AM ||[[Meetings/Delhi2012/Lectures/Session4|Session 4]]: Applications of genome-scale modelling.|| ||Mark Poolman; Oliver Ebenhoeh; Sudip Kundu || ||Thu 18|| PM ||[[Meetings/Delhi2012/Practicals/Practical_4|Practical 4]]: FBA continued|| ||Hassan Hartman; Sudip Kundu || ||Fri 19|| AM ||[[Meetings/Delhi2012/Lectures/Session5|Session 5]]: 1. Metabolic scope 2. Review and Conclusions|| ||Oliver Ebenhoeh; All || |
== Course Timetable and Resources Index (Provisional) == ||<tablewidth="1099px" tableheight="1801px"height="23px" style="text-align:left;vertical-align:top">'''Date''' ||<style="text-align:left;vertical-align:top">'''Day''' ||<style="text-align:left;vertical-align:top">'''Time''' ||<style="text-align:left;vertical-align:top">'''Place''' ||<style="text-align:left;vertical-align:top">'''Activity''' ||<style="text-align:left;vertical-align:top">'''Links''' ||<style="text-align:left;vertical-align:top">'''Lecturer''' || ||<height="23px" style="text-align:left;vertical-align:top">15/12/14 ||<style="text-align:left;vertical-align:top">Monday ||<style="text-align:left;vertical-align:top">13:00 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Room registration opens at St Anne's Lodge ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Workshop registration opens. ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Opening and introductions ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF || ||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DF || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L2. Sources of data for metabolic models ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DF || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">P1. Computers: checking internet connectivity, software installation ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">18:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Room registration (cont) ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Opening reception ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top">16/12/14 ||<style="text-align:left;vertical-align:top">Tuesday ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L3. Null space and elementary modes ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">MP? DF || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:00 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">L4. Computational representation of metabolic networks ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">MP || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P2. Python and ScrumPy ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L5. Biotechnological applications of metabolic network analysis ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DF || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P3. Null space analysis with ScrumPy ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/Coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L6. Linear Programming and Flux Balance Analysis ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">HH? || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P2 and P3 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top">17/12/14 ||<style="text-align:left;vertical-align:top">Wednesday ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L7. Building genome-scale metabolic networks ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">MP || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P4. Elementary modes of a simple model ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left">L8. Examples of analyzing genome scale metabolic models ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">MP or DF || ||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P5. Building models from MetaCyc with ScrumPy – group work ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/Coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="56px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P5 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:30 ||<style="text-align:left;vertical-align:top">UCR ||<style="text-align:left;vertical-align:top">Dinner (Upper Common Room) ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top">18/12/14 ||<style="text-align:left;vertical-align:top">Thursday ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="38px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L8. Modelling energy metabolism in Salmonella ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">HH || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P6. Flux Balance Analysis of a simple model ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">L9. Examples of genome scale modelling ||<style="text-align:left;vertical-align:top">Slides ||<style="text-align:left;vertical-align:top">DS KA || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P7. FB mini-projects (Group work) ||<style="text-align:left;vertical-align:top">Instructions ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Tea/Coffee ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P7 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="20px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">19:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">'''Workshop dinner with cash bar''' ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top">19/12/14 ||<style="text-align:left;vertical-align:top">Friday ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">P7 continued ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Reports from groups ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:00 ||<style="text-align:left;vertical-align:top">S8 ||<style="text-align:left;vertical-align:top">Any questions? Closing remarks ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">DF || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">S9 ||<style="text-align:left;vertical-align:top">Sandwich lunch (packed) ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || ||<height="23px" style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top">Departure ||<style="text-align:left;vertical-align:top"> ||<style="text-align:left;vertical-align:top"> || |
C1Net Workshop on Metabolic Modelling
Course Timetable and Resources Index (Provisional)
Date |
Day |
Time |
Place |
Activity |
Links |
Lecturer |
15/12/14 |
Monday |
13:00 |
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Room registration opens at St Anne's Lodge |
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13:30 |
S8 |
Workshop registration opens. |
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14:00 |
S8 |
Opening and introductions |
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DF |
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14:30 |
S8 |
L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week |
Slides |
DF |
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15:30 |
S9 |
Tea/coffee |
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16:00 |
S8 |
L2. Sources of data for metabolic models |
Slides |
DF |
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17:30 |
S9 |
P1. Computers: checking internet connectivity, software installation |
Instructions |
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18:30 |
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Room registration (cont) |
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19:00 |
S9 |
Opening reception |
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19:30 |
S9 |
Dinner |
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16/12/14 |
Tuesday |
08:00 |
Hall |
Breakfast |
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09:00 |
S8 |
L3. Null space and elementary modes |
Slides |
MP? DF |
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10:00 |
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L4. Computational representation of metabolic networks |
Slides |
MP |
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10:30 |
S9 |
Coffee/Tea |
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11:00 |
S8 |
P2. Python and ScrumPy |
Instructions |
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12:30 |
S9 |
Lunch |
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13:30 |
S8 |
L5. Biotechnological applications of metabolic network analysis |
Slides |
DF |
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14:30 |
S8 |
P3. Null space analysis with ScrumPy |
Instructions |
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15:30 |
S9 |
Tea/Coffee |
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16:00 |
S8 |
L6. Linear Programming and Flux Balance Analysis |
Slides |
HH? |
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17:00 |
S8 |
P2 and P3 continued |
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17:30 |
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Close |
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19:30 |
S9 |
Dinner |
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17/12/14 |
Wednesday |
08:00 |
Hall |
Breakfast |
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09:00 |
S8 |
L7. Building genome-scale metabolic networks |
Slides |
MP |
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10:30 |
S9 |
Coffee/Tea |
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11:00 |
S8 |
P4. Elementary modes of a simple model |
Instructions |
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12:30 |
S9 |
Lunch |
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13:30 |
S8 |
L8. Examples of analyzing genome scale metabolic models |
Slides |
MP or DF |
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14:30 |
S8 |
Instructions |
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15:30 |
S9 |
Tea/Coffee |
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16:00 |
S8 |
P5 continued |
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17:30 |
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Close |
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19:30 |
UCR |
Dinner (Upper Common Room) |
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18/12/14 |
Thursday |
08:00 |
Hall |
Breakfast |
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09:00 |
S8 |
L8. Modelling energy metabolism in Salmonella |
Slides |
HH |
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10:30 |
S9 |
Coffee/Tea |
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11:00 |
S8 |
P6. Flux Balance Analysis of a simple model |
Instructions |
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12:30 |
S9 |
Lunch |
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13:30 |
S8 |
L9. Examples of genome scale modelling |
Slides |
DS KA |
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14:30 |
S8 |
P7. FB mini-projects (Group work) |
Instructions |
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15:30 |
S9 |
Tea/Coffee |
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16:00 |
S8 |
P7 continued |
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17:30 |
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Close |
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19:30 |
S9 |
Workshop dinner with cash bar |
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19/12/14 |
Friday |
08:00 |
Hall |
Breakfast |
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09:00 |
S8 |
P7 continued |
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10:30 |
S9 |
Coffee/Tea |
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11:00 |
S8 |
Reports from groups |
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12:00 |
S8 |
Any questions? Closing remarks |
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DF |
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12:30 |
S9 |
Sandwich lunch (packed) |
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13:30 |
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Departure |
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