Differences between revisions 1 and 15 (spanning 14 versions)

C1Net Workshop 2 on Metabolic Modelling

Course Timetable and Resources Index

Day	Time	Place	Activity	Links	Lecturer
Monday	13:00
28/09/15	13:30	Mary O'Brien Room	Workshop registration opens.		MP, DF, (KA and NM)
	14:00	"	Opening and introductions		DF
	14:30	"	L1. Structure of metabolic networks and their representation	slides	MP
	15:30	"	Tea/coffee
	16:00	"	L2. Basic Concepts for Modelling Enzyme Kinetics	Basic Concepts for Modelling Enzyme Kinetics	DF
	17:00	"	P1. Plotting enzyme kinetic functions; graphical solution to a two enzyme system; rough time course calculation for an enzyme-catalysed reaction Plus: Computers: checking internet connectivity, software installati on.	Practical_1 and Installation of ScrumPy	DF, MP, KA
	18:30	Lodge	Room registration for Pipe Partridge block (available from 14:00)
	19:00	Old Library	Opening reception
	19:30	Deneke Dining Hall	Dinner

Tuesday	08:00	Deneke Dining Hall	Breakfast
29/09/15	09:00	Mary O'Brien Room	L3. Further enzyme kinetics for model building, plus	Lecture 3 slides	DF
	10:00		L3a. Fitting enzyme kinetica	Lecture 3a slides Supplementary Information on fitting kinetics	DF
	10:30		Coffee/Tea
	11:00		L4. Python and ScrumPy	Introduction to/Recap of Python	MP
	12:30	Mary O'Brien Room	Lunch (buffet)
	13:30	Mary O'Brien Room	P2. Python and ScrumPy / L4a: Construction and Analysis of Kinetic Models with ScrumPy (Those remembering their Python and ScrumPy can move ahead to P3)	Construction and Analysis of Models With ScrumPy Practical 2 Instructions	MP, DF, (HH , KA,NM)
	14:30		P3. Investigating properties of basic model structures	Kinetic Modelling	MP, DF, (HH, KA, NM)
	15:30		Tea/Coffee
	16:00		L5. Understanding the control of metabolism - intro to Metabolic Control Analysis	Lecture 5 slides	DF
	17:00		P3 continued		MP, DF, (HH, KA, NM)
	17:30		Close
	19:00	Deneke Dining Hall	Dinner

Wednesday	08:00	Deneke Dining Hall	Breakfast
30/09/15	09:00	Mary O'Brien Room	L6. Applications of Metabolic Control Analysis	Lecture 6 slides	DF
	10:00	"	P3 conclude and P4. Feedback inhibition.		MP, DF, (HH, NM)
	10:30		Coffee/Tea
	11:00		P4 continued.		MP, DF, (HH, NM)
	12:30	Mary O'Brien Room	Lunch
	13:00		Free time. Possibility of punting using the college punts on the river Cherwell, or if unavailable, from the Cherwell Boathouse.
	16:00	Mary O'Brien Room	Tea/Coffee.
	16:30		L7. Examples of metabolic models: Calvin cycle, threonine synthesis, Entner Duodorff pathway		MP + DF
	17:30		S1: Review of outcomes from practicals 3 and 4.		DF, NM
	19:00	Deneke Dining Hall	Dinner

Thursday	08:00	Deneke Dining Hall	Breakfast
1/10/15	09:00	Mary O'Brien Room	L8. MCA perspective on metabolic engineering from case studies.		DF
	10:00		P5. Calvin cycle simulation.		DF, MP, KA, NM
	10:30		Coffee/Tea
	11:00		P5 cont		DF, MP, KA, NM
	12:30	Mary O'Brien Room	Lunch
	13:30	Mary O'Brien Room	P6. Engineering threonine production.		DF, KA, NM
	14:30		P6 cont		MP, DF
	15:30		Tea/Coffee
	16:00		G1: Intro to group work problems.		DF, KA, NM
	17:30		Close
	18:30	Monson Room	Pre-dinner drinks
	19:00	Monson Room	Workshop dinner

Friday	08:00	Deneke Dining Hall	Breakfast and room checkout (Lodge)
2/10/15	09:00	Mary O'Brien Room	G1 continued		MP, DF, HH, KA, NM
	10:30		Coffee/Tea
	11:15		Reports from groups
	12:00		Any questions? Closing remark. Presentation of certificates		MP, DF, HH, KA, NM
	12:30	Mary O'Brien Room	Sandwich lunch (packed)
	13:30		Departure

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-== Skeleton Course Timetable and Resources Index ==
+== Course Timetable and Resources Index ==
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-||<height="20px" style="text-align:left;vertical-align:top">28/09/15 ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Workshop registration opens. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Opening and introductions ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="56px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L1. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Tea/coffee ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L2. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">17:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P1. Computers: checking internet connectivity, software installation. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">18:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Room registration ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Opening reception ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="20px" style="text-align:left;vertical-align:top">28/09/15 ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">Workshop registration opens. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP, DF,  (KA and NM) ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:00 ||<style="text-align:left;vertical-align:top">" ||<style="text-align:left;vertical-align:top">Opening and introductions ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">DF ||
||<height="56px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">" ||<style="text-align:left;vertical-align:top">L1.  Structure of metabolic networks and their representation ||<style="text-align:left;vertical-align:top">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/L1/Slides.pdf|slides]] ||<style="text-align:left;vertical-align:top">MP ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">" ||<style="text-align:left;vertical-align:top">Tea/coffee ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">" ||<style="text-align:left;vertical-align:top">L2. Basic Concepts for Modelling Enzyme Kinetics ||<style="text-align:left;vertical-align:top">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/LecturesDF/C1netW2_L2.pdf|Basic Concepts for Modelling Enzyme Kinetics]] ||<style="text-align:left;vertical-align:top">DF ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">17:00 ||<style="text-align:left;vertical-align:top">" ||<style="text-align:left;vertical-align:top">P1.  Plotting enzyme kinetic functions; graphical solution to a two enzyme   system; rough time course calculation for an enzyme-catalysed reaction  Plus: Computers: checking internet connectivity, software installati    on. ||<style="text-align:left;vertical-align:top">[[http://mudshark.brookes.ac.uk/Meetings/C1netWork2/Practicals/Practical1|Practical_1]] and [[http://mudshark.brookes.ac.uk/Meetings/C1netWork2/Practicals/ScrumPyVM|Installation]] of [[http://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<style="text-align:left;vertical-align:top">DF, MP, KA ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">18:30 ||<style="text-align:left;vertical-align:top">Lodge ||<style="text-align:left;vertical-align:top">Room registration for Pipe Partridge block (available from 14:00) ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">Old Library ||<style="text-align:left;vertical-align:top">Opening reception ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:30 ||<style="text-align:left;vertical-align:top">Deneke Dining Hall ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
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-||<height="18px" style="text-align:left;vertical-align:top">'''Tuesday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">29/09/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L3. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">10:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L4. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="18px" style="text-align:left;vertical-align:top">'''Tuesday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Deneke Dining Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">29/09/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">L3.  Further enzyme kinetics for model building, plus ||<style="text-align:left;vertical-align:top">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/LecturesDF/C1netW2_L3.pdf|Lecture 3 slides]] ||<style="text-align:left;vertical-align:top">DF ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">10:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L3a.  Fitting enzyme kinetica ||<style="text-align:left;vertical-align:top">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/LecturesDF/C1netW2_L3a.pdf|Lecture 3a slides]] [[Meetings/C1netWork2/Plan/Lec3Supp|Supplementary Information on fitting kinetics]] ||<style="text-align:left;vertical-align:top">DF ||
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-||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P2. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L5 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P3. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L4.  Python and ScrumPy ||<style="text-align:left;vertical-align:top">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/L4/Slides.pdf|Introduction to/Recap of Python]] ||<style="text-align:left;vertical-align:top">MP ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">Lunch (buffet) ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">P2.   Python and ScrumPy   / L4a:  Construction and Analysis of Kinetic Models with ScrumPy (Those remembering their Python and ScrumPy can move ahead to P3) ||<style="text-align:left;vertical-align:top">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/L4A/Slides.pdf|Construction and Analysis of Models With ScrumPy]] [[http://mudshark.brookes.ac.uk/Meetings/C1netWork2/Practicals/Practical2|Practical 2 Instructions]] ||<style="text-align:left;vertical-align:top">MP, DF, (HH , KA,NM) ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P3. Investigating properties of basic model structures ||<style="text-align:left;vertical-align:top">[[http://mudshark.brookes.ac.uk/Meetings/C1netWork2/Practicals/Practical3|Kinetic Modelling]] ||<style="text-align:left;vertical-align:top">MP, DF, (HH, KA, NM) ||
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-||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L6. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">17:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P2 and P3 continued ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L5. Understanding the control of metabolism - intro to Metabolic Control Analysis ||<style="text-align:left;vertical-align:top">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/LecturesDF/C1netW2_L5.pdf|Lecture 5 slides]] ||<style="text-align:left;vertical-align:top">DF ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">17:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P3 continued ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP, DF, (HH, KA, NM) ||
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-||<height="18px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="18px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">Deneke Dining Hall ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
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-||<height="18px" style="text-align:left;vertical-align:top">'''Wednesday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">30/09/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L7. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="18px" style="text-align:left;vertical-align:top">'''Wednesday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Deneke Dining Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">30/09/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">L6. Applications of Metabolic Control Analysis ||<style="text-align:left;vertical-align:top">                        [[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop2/LecturesDF/C1netW2_L6.pdf|Lecture 6 slides]]||<style="text-align:left;vertical-align:top">DF ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">10:00 ||<style="text-align:left;vertical-align:top">" ||<style="text-align:left;vertical-align:top">P3 conclude and P4. Feedback inhibition. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP, DF,  (HH, NM) ||
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-||<height="56px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P4 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Lunch '''+ free time''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">'''14:30 ''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="56px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">'''15:00 ''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="56px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P4 continued. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP, DF,  (HH, NM) ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">'''13:00 ''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left">'''Free time.  '''Possibility of punting using the [[http://www.lmh.ox.ac.uk/Conferences/What-LMH-offers/Punting.aspx|college punts]] on the river Cherwell, or if unavailable, from [[http://www.cherwellboathouse.co.uk/#section-04|the Cherwell Boathouse]]. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">Tea/Coffee. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="56px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:30''' ''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L7. Examples of metabolic models: Calvin cycle, threonine synthesis, Entner Duodorff pathway ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP + DF ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">S1:  Review of outcomes from practicals 3 and 4. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">DF, NM ||
||<height="18px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">Deneke Dining Hall ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="18px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="18px" style="text-align:left;vertical-align:top">'''Thursday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Deneke Dining Hall ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top"> ||
||<height="20px" style="text-align:left;vertical-align:top">1/10/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">L8.  MCA perspective on metabolic engineering from case studies. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">DF ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">10:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P5.  Calvin cycle simulation. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">DF, MP, KA, NM ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P5 cont ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">DF, MP, KA, NM ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">P6.  Engineering threonine production. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">DF, KA, NM ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P6 cont ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP, DF ||
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-||<height="56px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">'''17:00''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P5 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">'''18:00''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="18px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Dinner ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">G1:   Intro to group work problems. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">DF, KA, NM ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">18:30 ||<style="text-align:left;vertical-align:top">Monson Room ||<style="text-align:left;vertical-align:top">Pre-dinner drinks ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">Monson Room ||<style="text-align:left;vertical-align:top">'''Workshop dinner''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
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-||<height="18px" style="text-align:left;vertical-align:top">'''Thursday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">1/10/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L9 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="18px" style="text-align:left;vertical-align:top">'''Friday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">Deneke Dining Hall ||<style="text-align:left;vertical-align:top">Breakfast and room checkout (Lodge) ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">2/10/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">G1 continued ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP, DF, HH, KA, NM ||
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-||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P6. ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Lunch ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="38px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">13:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">L10 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">14:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P7  (Group work) ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">15:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Tea/Coffee ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">16:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P7 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">17:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Close ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">18:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Pre-dinner drinks ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">19:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">'''Workshop dinner''' ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="18px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="18px" style="text-align:left;vertical-align:top">'''Friday''' ||<style="text-align:left;vertical-align:top">08:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Breakfast ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">2/10/15 ||<style="text-align:left;vertical-align:top">09:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">P7 continued ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">10:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Coffee/Tea ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Reports from groups ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Any questions?  Closing remarks ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Sandwich lunch (packed) ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
+||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">11:15 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Reports from groups ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:00 ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">Any questions?  Closing remark.  Presentation of certificates ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">MP, DF, HH, KA, NM ||
||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">12:30 ||<style="text-align:left;vertical-align:top">Mary O'Brien Room ||<style="text-align:left;vertical-align:top">Sandwich lunch (packed) ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||
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+||<height="20px" style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||<style="text-align:left;vertical-align:top">                        ||