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| ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot"">'''Day''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''Time''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''Place''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''Activity''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''Links''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''Lecturer''' || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot"">'''Monday''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">12:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Registration opens at St James Hotel ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot"">23/1/17 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">12:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">13:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Opening and introductions ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 56px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">14:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L1.pdf|Slides]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">15:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Tea/coffee ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">16:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L2. Computational representation of metabolic networks ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L4.pdf|Slides]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">MP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">17:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P1. Computers: checking internet connectivity, software installation. ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudshark.brookes.ac.uk/Meetings/Nepal2016/ScrumPyInstall|Installation]] of ScrumPy. ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">18:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Close and room registration (cont) ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">19:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Dinner ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot"">'''Tuesday''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">08:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Breakfast ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot"">16/12/14 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">09:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L3. Sources of data for metabolic model ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L2.pdf|Slides]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">10:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L4. Null space and elementary modes ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L3.pdf|Slides]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">10:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Coffee/Tea ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">11:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P2. Python and !ScrumPy ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudshark.brookes.ac.uk/AccliPhot/WorkshopOne/prac1|Instructions]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">12:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">13:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L5. Biotechnological applications of metabolic network analysis ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L5.pdf|Slides]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">14:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">S8 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P3. Null space analysis with !ScrumPy ||<style="" & quot;text-align:left;vertical-align:top& quot; "">As P2 plus these [[http://mudshark.brookes.ac.uk/Meetings/Riga2013/Practicals/Practical_2/ScrumPyIntro|instructions]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">15:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">S9 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Tea/Coffee ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">16:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">S8 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L6. Linear Programming and Flux Balance Analysis ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L6.pdf|Slides]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">MP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">17:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">S8 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P2 and P3 continued ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">17:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">19:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">S9 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Dinner ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot"">'''Wednesday''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">08:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Hall ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Breakfast ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot"">17/12/14 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">09:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L7. Building genome-scale metabolic networks ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L7.pdf|Slides]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">MP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">10:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Coffee/Tea ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 56px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">11:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P4. Elementary modes of a simple model ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudshark.brookes.ac.uk/AccliPhot/WorkshopOne/prac2|Instructions]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">12:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Lunch '''+ free time (Nottingham Castle and Caves?)''' ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''15:30 ''' ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left& quot; "">Tea/Coffee ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 56px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''15:45 ''' ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L8. Examples of analyzing genome scale metabolic models ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L8.pdf|Slides]]||<style="" & quot;text-align:left;vertical-align:top& quot; "">MP or DF || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">16:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P5. Building models from !MetaCyc with !ScrumPy ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[Meetings/C1netWork1/Prac5|Instructions]]||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP|| ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 56px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''17:00''' ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P5 continued ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''18:00''' ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">19:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Dinner ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot"">'''Thursday''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">08:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Breakfast ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot"">18/12/14 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">09:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L9. Examples of genome scale modelling ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Slides ||<style="" & quot;text-align:left;vertical-align:top& quot; "">NM, RN, NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">10:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Coffee/Tea ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">11:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P6. Flux Balance Analysis of a simple model- convert to E coli fatty acids from glucose ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[Meetings/C1netWork1/Prac6|Instructions]] ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">12:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 38px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">13:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">L10. LP techniques for exploring genome scale models ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">MP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">14:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P6 continued ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">15:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Tea/Coffee ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">16:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P7. Analysing a genome scale model of E coli for fatty acid production ||<style="" & quot;text-align:left;vertical-align:top& quot; "">[[Meetings/C1NetWork1/Prac7|Instructions]]||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">17:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">19:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">'''Workshop dinner''' ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 18px& quot" ;&quot"">'''Friday''' ||<style="" & quot;text-align:left;vertical-align:top& quot; "">08:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Breakfast ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot"">19/12/14 ||<style="" & quot;text-align:left;vertical-align:top& quot; "">09:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">P7 continued ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">10:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Coffee/Tea ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">11:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Discussion of results and prospective applications of modelling in attendees' projects ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">12:00 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">Any questions? Closing remarks ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">DF& MP || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">12:30 ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; "">(Sandwich?) lunch and departure ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || ||<height=""" style="" & quot;text-align:left;vertical-align:top& quot; ; 20px& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> ||<style="" & quot;text-align:left;vertical-align:top& quot; ""> || |
||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">'''Day''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''Time''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''Place''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''Activity''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''Links''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''Lecturer''' || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">'''Monday''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">12:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Registration opens at St James Hotel ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">23/1/17 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">12:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Lunch ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">13:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Opening and introductions ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 56px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">14:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L1.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">15:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Tea/coffee ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">16:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L2. Computational representation of metabolic networks ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L4.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">MP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">17:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P1. Computers: checking internet connectivity, software installation. ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudshark.brookes.ac.uk/Meetings/Nepal2016/ScrumPyInstall|Installation]] of ScrumPy. ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">18:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Close and room registration (cont) ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">19:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Dinner ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">'''Tuesday''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">08:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Breakfast ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">16/12/14 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">09:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L3. Sources of data for metabolic model ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L2.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">10:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L4. Null space and elementary modes ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L3.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">10:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Coffee/Tea ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">11:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P2. Python and !ScrumPy ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudshark.brookes.ac.uk/AccliPhot/WorkshopOne/prac1|Instructions]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">12:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Lunch ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">13:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L5. Biotechnological applications of metabolic network analysis ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L5.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">14:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">S8 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P3. Null space analysis with !ScrumPy ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">As P2 plus these [[http://mudshark.brookes.ac.uk/Meetings/Riga2013/Practicals/Practical_2/ScrumPyIntro|instructions]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">15:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">S9 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Tea/Coffee ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">16:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">S8 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L6. Linear Programming and Flux Balance Analysis ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L6.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">MP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">17:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">S8 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P2 and P3 continued ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">17:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Close ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">19:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">S9 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Dinner ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">'''Wednesday''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">08:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Hall ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Breakfast ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">17/12/14 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">09:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L7. Building genome-scale metabolic networks ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L7.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">MP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">10:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Coffee/Tea ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 56px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">11:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P4. Elementary modes of a simple model ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudshark.brookes.ac.uk/AccliPhot/WorkshopOne/prac2|Instructions]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">12:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Lunch '''+ free time (Nottingham Castle and Caves?)''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''15:30 ''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; "">Tea/Coffee ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 56px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''15:45 ''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L8. Examples of analyzing genome scale metabolic models ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop1/L8.pdf|Slides]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">MP or DF || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">16:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P5. Building models from !MetaCyc with !ScrumPy ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[Meetings/Nepal2016/P2|Instructions]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 56px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''17:00''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P5 continued ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''18:00''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Close ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">19:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Dinner ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">'''Thursday''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">08:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Breakfast ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">18/12/14 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">09:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L9. Examples of genome scale modelling ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Slides ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">NM, RN, NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">10:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Coffee/Tea ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">11:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P6. Flux Balance Analysis of a simple model- convert to E coli fatty acids from glucose ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[Meetings/C1netWork1/Prac6|Instructions]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">12:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Lunch ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 38px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">13:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">L10. LP techniques for exploring genome scale models ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">MP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">14:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P6 continued ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">15:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Tea/Coffee ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">16:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P7. Analysing a genome scale model of E coli for fatty acid production ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">[[Meetings/C1NetWork1/Prac7|Instructions]] ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">17:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Close ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">19:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">'''Workshop dinner''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 18px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">'''Friday''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">08:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Breakfast ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">19/12/14 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">09:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">P7 continued ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">10:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Coffee/Tea ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">11:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Discussion of results and prospective applications of modelling in attendees' projects ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF, MP, NM,RN,NP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">12:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">Any questions? Closing remarks ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">DF& MP || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">12:30 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; "">(Sandwich?) lunch and departure ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; ; 20px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:top& amp; quot; & quot; ""> || |
C1Net Workshop 3 on Metabolic Modelling
Tutors
- David Fell (DF: Oxford Brookes University)
- Mark Poolman (MP: Oxford Brookes University)
- Noah Mesfin (NM: Oxford Brookes University)
- Rupert Norman (RN: University of Nottingham)
- Nicole Pearcy (NP: University of Nottingham)
Course Timetable and Resources Index
Day |
Time |
Place |
Activity |
Links |
Lecturer |
Monday |
12:00 |
|
Registration opens at St James Hotel |
|
|
23/1/17 |
12:30 |
|
Lunch |
|
|
|
13:30 |
|
Opening and introductions |
|
DF |
|
14:00 |
|
L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week |
DF |
|
|
15:30 |
|
Tea/coffee |
|
|
|
16:00 |
|
L2. Computational representation of metabolic networks |
MP |
|
|
17:00 |
|
P1. Computers: checking internet connectivity, software installation. |
Installation of ScrumPy. |
DF, MP, NM,RN,NP |
|
18:00 |
|
Close and room registration (cont) |
|
|
|
|
|
|
|
|
|
19:30 |
|
Dinner |
|
|
|
|
|
|
|
|
Tuesday |
08:00 |
|
Breakfast |
|
|
16/12/14 |
09:00 |
|
L3. Sources of data for metabolic model |
DF |
|
|
10:00 |
|
L4. Null space and elementary modes |
DF |
|
|
10:30 |
|
Coffee/Tea |
|
|
|
11:00 |
|
P2. Python and ScrumPy |
DF, MP, NM,RN,NP |
|
|
12:30 |
|
Lunch |
|
|
|
13:30 |
|
L5. Biotechnological applications of metabolic network analysis |
DF |
|
|
14:30 |
S8 |
P3. Null space analysis with ScrumPy |
As P2 plus these instructions |
DF, MP, NM,RN,NP |
|
15:30 |
S9 |
Tea/Coffee |
|
|
|
16:00 |
S8 |
L6. Linear Programming and Flux Balance Analysis |
MP |
|
|
17:00 |
S8 |
P2 and P3 continued |
|
|
|
17:30 |
|
Close |
|
|
|
19:30 |
S9 |
Dinner |
|
|
|
|
|
|
|
|
Wednesday |
08:00 |
Hall |
Breakfast |
|
|
17/12/14 |
09:00 |
|
L7. Building genome-scale metabolic networks |
MP |
|
|
10:30 |
|
Coffee/Tea |
|
|
|
11:00 |
|
P4. Elementary modes of a simple model |
DF, MP, NM,RN,NP |
|
|
12:30 |
|
Lunch + free time (Nottingham Castle and Caves?) |
|
|
|
15:30 |
|
Tea/Coffee |
|
|
|
15:45 |
|
L8. Examples of analyzing genome scale metabolic models |
MP or DF |
|
|
16:00 |
|
P5. Building models from MetaCyc with ScrumPy |
DF, MP, NM,RN,NP |
|
|
17:00 |
|
P5 continued |
|
|
|
18:00 |
|
Close |
|
|
|
19:30 |
|
Dinner |
|
|
|
|
|
|
|
|
Thursday |
08:00 |
|
Breakfast |
|
|
18/12/14 |
09:00 |
|
L9. Examples of genome scale modelling |
Slides |
NM, RN, NP |
|
10:30 |
|
Coffee/Tea |
|
|
|
11:00 |
|
P6. Flux Balance Analysis of a simple model- convert to E coli fatty acids from glucose |
DF, MP, NM,RN,NP |
|
|
12:30 |
|
Lunch |
|
|
|
13:30 |
|
L10. LP techniques for exploring genome scale models |
|
MP |
|
14:30 |
|
P6 continued |
|
DF, MP, NM,RN,NP |
|
15:30 |
|
Tea/Coffee |
|
|
|
16:00 |
|
P7. Analysing a genome scale model of E coli for fatty acid production |
DF, MP, NM,RN,NP |
|
|
17:30 |
|
Close |
|
|
|
|
|
|
|
|
|
19:30 |
|
Workshop dinner |
|
|
|
|
|
|
|
|
Friday |
08:00 |
|
Breakfast |
|
|
19/12/14 |
09:00 |
|
P7 continued |
|
DF, MP, NM,RN,NP |
|
10:30 |
|
Coffee/Tea |
|
|
|
11:00 |
|
Discussion of results and prospective applications of modelling in attendees' projects |
|
DF, MP, NM,RN,NP |
|
12:00 |
|
Any questions? Closing remarks |
|
DF& MP |
|
12:30 |
|
(Sandwich?) lunch and departure |
|
|
|
|
|
|
|
|