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| a | = Innotargets: Introduction to Metabolic Modelling = == India 2024 == == Tutors == * Dr Mark Poolman (MP: Oxford Brookes University) * Dr Anu Raghunathan (AR: NCL, Pune) * Dr Dipali Singh (DS: Quadram Institute, Norwich) * Pareena Verma (PV: Oxford Brookes University) * Dr Trunil Desai (TD: Oxford Brookes University) == Guest Speaker == * TBD == Course Timetable and Resources == ||'''Day''' ||'''Time''' ||'''Activity''' ||'''Links''' ||'''Lecturer''' || ||Day 1 - Tues(17/09) || || || || || ||AM ||09:00 ||Arrival, Admin & Registration etc || || || || ||12:00 ||Lunch || || || || || || || || || ||PM ||13:00 ||Welcome and introduction to the course - why do modelling? || ||M, AR || || ||13:30 ||Lecture 1: Introduction to metabolic modelling. ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L1.pdf|Slides]] ||TBD || || ||15:00 ||Tea/coffee || || || || ||15:30 ||Lecture 2: Python and computational representation of metabolic networks. ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L2.pdf|Slides]] ||TBD || || ||16:30 ||P1. Computers: checking internet connectivity, software installation. ||[[https://mudshark.brookes.ac.uk/Meetings/Barcelona2023/ScrumPyInstall|Prac1]] ||All || || || ||P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||[[https://mudshark.brookes.ac.uk/Meetings/Nottingham2022/Prac2|Prac2]] ||All || || || ||Close || || || || || || || || || ||Day 2 - Wed (18/09) || || || || || ||AM ||09:00 ||Lecture 3: Null space, elementary modes and conserved cycles ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L3.pdf|Slides]] ||TBD || || ||10:00 ||P3. Null space, subsets and elementary modes ||[[https://mudshark.brookes.ac.uk/Meetings/Barcelona/Prac3|Prac3]] ||All || || ||11:00 ||tea/coffee || || || || ||11:30 ||P3 continues || ||All || || || ||Lunch || || || || || || || || || ||PM ||13:00 ||Guest lecture || ||Sudip? || || ||14:00 ||Lecture 4. Linear programming and Flux Balance Analysis ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L4.pdf|Slides]] ||TBD || || ||15:00 ||tea/coffe || || || || ||15:30 ||P4: LP - maybe? || || || || ||16:00 ||FBA - Title to be added by Anu || ||AR || || || || || || || ||Day 3 Thurs (19/09) || || || || || ||AM ||09:00 ||Lecture 5: Construction and Validation of GSMs ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L7.pdf|Slides]] ||DS || || ||10:00 ||Lecture 6: Application of GSMM in cancer biology/CoVID model? || ||AR || || ||11:00 ||Lecture 7: INNOTARGETS - AMR || ||PV || || ||12:00 ||P5: INNOTARGETS practical || ||All || || || || || || || || || ||Lunch || || || || || || || || || || ||14:00 ||Lecture 8: Determination of minimal media requirements for ''Campylobacter jejuni'' ||[[http://mudsharkstatic.brookes.ac.uk/Barcelona2023/L6.pdf|Slides]] ||DS || || ||15:00 ||P6: Determination of minimal media requirements for ''Campylobacter jejuni'' ||[[https://mudsharkstatic.brookes.ac.uk/Nottingham2022/P5|Prac6]] ||All || || || || || || || ||Day 4 - Fri (20/09) || || || || || ||AM ||09:00 ||Finish Practicals/General Discussion || ||All || || || ||Go Home! || || || |
Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Anu Raghunathan (AR: NCL, Pune)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
- TBD
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Day 1 - Tues(17/09) |
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|
AM |
09:00 |
Arrival, Admin & Registration etc |
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|
12:00 |
Lunch |
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PM |
13:00 |
Welcome and introduction to the course - why do modelling? |
|
M, AR |
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13:30 |
Lecture 1: Introduction to metabolic modelling. |
TBD |
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15:00 |
Tea/coffee |
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15:30 |
Lecture 2: Python and computational representation of metabolic networks. |
TBD |
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16:30 |
P1. Computers: checking internet connectivity, software installation. |
All |
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P2. Python and ScrumPy |
All |
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Close |
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Day 2 - Wed (18/09) |
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AM |
09:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
TBD |
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10:00 |
P3. Null space, subsets and elementary modes |
All |
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11:00 |
tea/coffee |
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11:30 |
P3 continues |
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All |
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Lunch |
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PM |
13:00 |
Guest lecture |
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Sudip? |
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14:00 |
Lecture 4. Linear programming and Flux Balance Analysis |
TBD |
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15:00 |
tea/coffe |
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15:30 |
P4: LP - maybe? |
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16:00 |
FBA - Title to be added by Anu |
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AR |
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Day 3 Thurs (19/09) |
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AM |
09:00 |
Lecture 5: Construction and Validation of GSMs |
DS |
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10:00 |
Lecture 6: Application of GSMM in cancer biology/CoVID model? |
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AR |
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11:00 |
Lecture 7: INNOTARGETS - AMR |
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PV |
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12:00 |
P5: INNOTARGETS practical |
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All |
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Lunch |
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14:00 |
Lecture 8: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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15:00 |
P6: Determination of minimal media requirements for Campylobacter jejuni |
All |
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Day 4 - Fri (20/09) |
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AM |
09:00 |
Finish Practicals/General Discussion |
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All |
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Go Home! |
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