Innotargets: Introduction to Metabolic Modelling
Barcelona 2023
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Anu Raghunathan (AR: NCL, Pune)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
- TBD
Course Timetable and Resources
Day |
Time |
Activity |
Links |
Lecturer |
Day 1 - Tues(17/09) |
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AM |
09:00 |
Arrival, Admin & Registration etc |
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12:00 |
Lunch |
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PM |
13:00 |
Welcome and introduction to the course - why do modelling? |
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M, AR |
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13:30 |
Lecture 1: Introduction to metabolic modelling. |
TBD |
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15:00 |
Tea/coffee |
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15:30 |
Lecture 2: Python and computational representation of metabolic networks. |
TBD |
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16:30 |
P1. Computers: checking internet connectivity, software installation. |
All |
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P2. Python and ScrumPy |
All |
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Close |
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Day 2 - Wed (18/09) |
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AM |
09:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
TBD |
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10:00 |
P3. Null space, subsets and elementary modes |
All |
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11:00 |
tea/coffee |
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11:30 |
P3 continues |
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All |
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Lunch |
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PM |
13:00 |
Guest lecture |
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Sudip? |
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14:00 |
Lecture 4. Linear programming and Flux Balance Analysis |
TBD |
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15:00 |
tea/coffe |
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15:30 |
P4: LP - maybe? |
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16:00 |
FBA - Title to be added by Anu |
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AR |
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Day 3 Thurs (19/09) |
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AM |
09:00 |
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Lecture 5: Response to varying ATP demand in a metabolic model of Salmonella typhimurium |
MP |
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10:30 |
Break |
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P4 Central metabolism of S. epidermidis |
YS/DS |
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13:00 |
Lunch |
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Lecture 6: Determination of minimal media requirements for Campylobacter jejuni |
DS |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
All |
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Friday |
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AM |
09:00 |
Lecture 7: construction and validation |
DS |
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Finish practicals/General discussion/Something else |
(Optional if time allows) |
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13:00 |
Lunch |
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Go home! |
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