Differences between revisions 23 and 25 (spanning 2 versions)

Workshop on Metabolic Modelling - Provisional Timetable

This timetable is not yet finalised. Both timings and content are liable to change, but the material here represents what will be covered in the talks.

Tutors

David Fell (DF: Oxford Brookes University)
Mark Poolman (MP: Oxford Brookes University)
Noah Mesfin (NM: Oxford Brookes University)
Ela Al-Saidi (ES: Oxford Brookes University)
Kailash Adhikari (KA)

Course Timetable and Resources

Day	Time	Activity	Links	Lecturer
Thursday	AM
28/06/18	09:00	Admin & Registration
	10:00	Opening Ceremony
	10:30	Introductions. Each participant introduces themself in 2-3 sentences: name, place of study/work; what they do.		Everyone
	11:00	Tea
	11:30	Welcome and introduction to the course	Slides	DF
	13:00	Lunch
	PM
	14:00	L1. Introduction to metabolic modelling. Mathematical representation of metabolic networks. Outline of the week	Slides	DF
		Tea/coffee
		L2. Computational representation of metabolic networks	Slides	MP
		P1. Computers: checking internet connectivity, software installation.	Installation of ScrumPy.	All
	!6:45	Close
Friday	AM
	09:30	L3. Null space and elementary modes	Slides	NM
		Demo for Prac 2.		TBC
		P2. Python and ScrumPy (Part 1)	Prac2 ***instructions	All
	11:00	Break
		P2. Python and ScrumPy (Part 2)	Prac2 ***instructions	All
	13:00	Lunch
	PM	L4. Biotechnological applications of metabolic network analysis	Slides	DF
		Demo for Prac 3		TBC
		P3. Models, kernels, subsets and elementary modes	Prac 3 ***instructions	All
		Break
		P3. Models, kernels, subsets and elementary modes (continued)		All
	16:45	Close
Monday
	09:30	Demo for Prac4 (??)
		P4. Structural analysis of the Calvin Cycle.	Prac 4 ***instructions	ALL
	11:00	Break
		L5. Linear Programming and Flux Balance Analysis	Slides	NM
		L6. Sources of data for metabolic models	Slides	DF
	13:00	Lunch
	PM	L7. Building genome-scale metabolic networks	Slides	MP
		P5. Flux Balance Analysis of fatty acid biosynthesis in E coli.	Prac 5 ***instructions	All
	16:45	close
Tuesday	AM
	09:30	L8. a: The unique metabolism of Acetobacterium woodii. b: Beyond Structural Modelling.	Noah's slides;	NM, EA
		Intro to P6 - * demonstrate datasets*		MP
		P6. Analysing a genome scale model	Prac 6 ***instructions	All
	11:00	Break
		L8 Modelling photosynthesis in eukaryotes (title TBC)	Need link to slides	KA
	13:00	Lunch		All
	14:00	P6 ctd.		All
		Closing remarks
		Certificates
	16:45	Depart

-  ⇤ ← Revision 23 as of 2018-06-27 09:42:36 → 
  Size: 3939
  Editor: david
  Comment: Times
+   ← Revision 25 as of 2018-06-27 10:58:09 → ⇥
  Size: 4138
  Editor: david
  Comment: Link to Noah's slides added
-Deletions are marked like this.
+Additions are marked like this.
 Line 16:
-|| ||10:30 ||Introductions.  Each participant introduces themself in 2-3 sentences: name, place of study/work; what they do. || || ||
|| || ||Welcome and introduction to the course ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L0.pdf|Slides]] ||DF ||
|| || ||Lunch || || ||
|| ||'''PM''' ||L1.  Introduction to metabolic modelling.  Mathematical                     representation of metabolic networks.  Outline of the week ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L1.pdf|Slides]] ||DF ||
+|| ||10:30 ||Introductions.  Each participant introduces themself in 2-3 sentences: name, place of study/work; what they do. || ||Everyone ||
|| ||11:00 ||Tea || || ||
|| ||11:30 ||Welcome and introduction to the course ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L0.pdf|Slides]] ||DF ||
|| ||13:00 ||Lunch || || ||
|| ||'''PM''' || || || ||
|| ||14:00 ||L1.  Introduction to metabolic modelling.  Mathematical                     representation of metabolic networks.  Outline of the week ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L1.pdf|Slides]] ||DF ||
-Line 23:
+Line 25:
-|| || || || || ||
||'''Friday''' ||'''AM''' ||L3. Null space and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L3.pdf|Slides]] ||NM ||
+|| ||!6:45 ||Close || || ||
||'''Friday''' ||'''AM''' || || || ||
|| ||09:30 ||L3. Null space and elementary modes ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L3.pdf|Slides]] ||NM ||
-Line 27:
+Line 30:
-|| || ||Break || || ||
+|| ||11:00 ||Break || || ||
-Line 29:
+Line 32:
-|| || ||Lunch || || ||
+|| ||13:00 ||Lunch || || ||
-Line 35:
+Line 38:
-|| || ||<<BR>> ||<<BR>> || ||
||'''Monday''' ||'''AM''' ||Demo for Prac4 (??) || || ||
+|| ||16:45 ||Close || || ||
||'''Monday''' || || || || ||
|| ||09:30 ||Demo for Prac4 (??) || || ||
-Line 38:
+Line 42:
-|| || ||Break || || ||
+|| ||11:00 ||Break || || ||
-Line 41:
+Line 45:
-|| || ||Lunch || || ||
+|| ||13:00 ||Lunch || || ||
-Line 44:
+Line 48:
-|| || || || || ||
||'''Tuesday''' || ||L8. '''a''': The unique metabolism of ''Acetobacterium woodii''.  '''b''': Beyond Structural Modelling. ||[[http://mudsharkstatic.brookes.ac.uk/C1Net/Wshop4/L8_NM.pdf|Noah's                         slides]]; ||NM, EA ||
+|| ||16:45 ||close || || ||
||'''Tuesday''' ||'''AM''' || || || ||
|| ||09:30 ||L8. '''a''': The unique metabolism of ''Acetobacterium woodii''.  '''b''': Beyond Structural Modelling. ||[[http://mudsharkstatic.brookes.ac.uk/Nepal2018/L8.pdf|Noah's                         slides]]; ||NM, EA ||
-Line 48:
+Line 53:
-|| || ||Break || || ||
+|| ||11:00 ||Break || || ||
-Line 50:
+Line 55:
-|| || ||Lunch || ||All ||
|| || ||P6 ctd. || ||All ||
+|| ||13:00 ||Lunch || ||All ||
|| ||14:00 ||P6 ctd. || ||All ||
-Line 54:
+Line 59:
-|| || || || || ||
+|| ||16:45 ||Depart || || ||