Metabolic Modelling: Tools, Techniques, and Applications in Research

Nepal 2024

Tutors

Guest Speaker

Course Timetable and Resources

Day

Time

Activity

Links

Tutor

Day 1 - Mon(23/09)

AM

09:30

Arrival, Admin & Registration etc

10:00

Welcome and introduction to the course

DS

From Genome Sequence to Pathway using Pathway Tools

Demo

DS

Lecture 1: Introduction to metabolic modelling.

Slides

TD/MP

P1: Computers: checking internet connectivity, software installation.

Prac1

All

PM

12:00

Lunch

P1: Continue

14:00

Lecture 2: Python and computational representation of metabolic networks.

Slides

TD/MP

Lecture 3: Why do metabolic modelling?

MP

15:00

Tea/Coffee Break

15:30

P2: Python and ScrumPy

Prac2 Prac3

All

17:00

Close

Day 2 - Tues(24/09)

AM

10:00

Lecture 4: Linear programming, Flux Balance Analysis and Applications

Guest Lecture

AR

PM

12:00

Lunch

13:00

P4: Biofilm formation in opportunistic human pathogen Staphylococcus epidermidis

Prac4

15:00

Tea/Coffee Break

15:30

P4: Continue

17:00

Close

Day 3 Wed (25/09)

AM

10:00

Lecture 5: Identification of nutrient requirements for growth of Campylobacter jejuni

Slides

DS

11:00

P5: Identification of nutrient requirements for growth of Campylobacter jejuni

Prac5

All

PM

12:00

Lunch

14:00

Lecture 6: Antimicrobial target identification by GSMM

Slides

PV/MP

P6: Antimicrobial target identification by GSMM

Prac6 Materials

All

15:00

Tea/Coffee Break

15:30

Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied.

17:00

Close

Day 4 - Thurs (26/09)

AM

10:00

P6: continue

All

APM

12:00

Lunch

13:00

Participants to present the outcome of the group discussion

All

15:00

Finish Practicals/General Discussion

All

Go Home!

None: Meetings/Nepal2024/Timetable (last edited 2024-09-24 07:26:33 by dipali)