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| * Dr Anu Raghunathan (AR: NCL, Pune) | |
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| == Guest Speaker == TBD ||<(v height="17px">'''Day'''||<(v>'''Time'''||<(v>'''Activity'''||<(v>'''Links'''||<(v>'''Tutor'''|| ||<(v height="17px">Day 1 – Monday||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">AM||<)v>09:30:00||<(v>Arrival, Admin etc ||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px"> ||<)>10:00:00||<(>Welcome and introduction to the course - why do modelling?||<(> ||<(>MP|| ||<( height="17px"> ||<)>10:30:00||<(v>Lecture 1: Introduction to metabolic modelling. ||<(> ||<(>TBD|| ||<( height="17px"> ||<(> ||<(v>Lecture 2: Python and computational representation of metabolic networks.||<(> ||<(>TBD|| ||<( height="17px"> ||<(> ||<(v>P1. Computers: checking internet connectivity, software installation.||<(> ||<(>All|| ||<(v height="17px"><<BR>>||<)v>12:00:00||<(v>Lunch ||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">PM||<)v>13:00:00||<(v>P1. Contd.||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>13:30:00||<(>P2. Python and ScrumPy||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px"> ||<(> ||<(> ||<(> ||<(> || ||<(v height="17px">Day 2 – Tuesday||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">AM||<)v>10:00:00||<(v>Lecture 3: Null space, elementary modes and conserved cycles||<(v><<BR>>||<(v>TBD|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>P3. Null space, subsets and elementary modes||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>12:00:00||<(v>Lunch||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">PM||<)v>13:00:00||<(v>Lecture 4: Linear programming and Flux Balance Analysis||<(v><<BR>>||<(v>TBD|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>P4. LP – Central metabolism of Staphylococcus epidermidis||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px"> ||<(> ||<(> ||<(> ||<(> || ||<(v height="17px">Day 3 – Wednesday||<(> ||<(> ||<(> ||<(> || ||<(v height="17px">AM||<)v>10:00:00||<(v>Lecture 5: Construction, Validation and Applications of GSMs||<(v><<BR>>||<(v>DS|| ||<(v height="17px"><<BR>>||<)v>11:00:00||<(v>Lecture 6: Antimicrobial resistance mechanism in E.coli||<(v><<BR>>||<(v>PV|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>Lunch||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px">PM||<)v>13:00:00||<(v>P5: LP – Antimicrobial resistance ||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>15:00:00||<(v>Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied.||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px"><<BR>>||<(> ||<(> ||<(> ||<(> || ||<( height="17px"> ||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">Day 4 – Thursday||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">AM||<)v>10:00:00||<(v>Participants to present the outcome of the group discussion||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>Lunch||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">PM||<)v>13:00:00||<(v>Lecture 7: Determination of minimal media requirements for Campylobacter jejuni||<(v><<BR>>||<(v>DS|| ||<(v height="17px"><<BR>>||<)v>14:00:00||<(v>P6: Determination of minimal media requirements for Campylobacter jejuni||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| |
||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Day ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Time ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Activity ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Links||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lecturer|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">'''Mon'''||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">10:00:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Welcome and introduction to the course - why do modelling? ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">TBD|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">TBD|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">12:30:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lunch||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lecture 2: Python and computational representation of metabolic networks. ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">TBD|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">P1. Computers: Checking internet connectivity, software installation. ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">All|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">All|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">17:00:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Close ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">'''Tues'''||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">10:00:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lecture 3: Null space and elementary modes||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"> ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">TBD|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">'''<<BR>>'''||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">P3. Null space, subsets and elementary modes||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">All|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">12:30:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lunch ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lecture 4: Linear programming and Flux Balance Analysis ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">TBD|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">P4. Central metabolism of S. epidermidis ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">All|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">17:00:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Close||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">'''Wed'''||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">10:00:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lecture 5: Determination of minimal media requirements for Campylobacter jejuni||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">DS|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">P5: Determination of minimal media requirements for Campylobacter jejuni||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">All|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">12:30:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lunch ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lecture 6: Phaeodactylum tricornutm for biofuel synthesis ||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">DS|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">P5: Continued||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">All|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">17:00:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Close||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="36px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>Thur||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>10:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>Case study project presentation by the participants||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">12:30:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Lunch||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">P6. Identifying pathways for TAG synthesis in P. tricornutm||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">All|| ||<( height="20px" style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<) style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">17:00:00||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000">Closing dinner||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>||<( style="border-top: 1px solid #000000; border-bottom: 1px solid #000000; border-left: 1px solid #000000; border-right: 1px solid #000000"><<BR>>|| |
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This web page under is under construction.
Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Day |
Time |
Activity |
Links |
Lecturer |
Mon |
10:00:00 |
Welcome and introduction to the course - why do modelling? |
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TBD |
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Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
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TBD |
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12:30:00 |
Lunch |
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Lecture 2: Python and computational representation of metabolic networks. |
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TBD |
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P1. Computers: Checking internet connectivity, software installation. |
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All |
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P2. Python and ScrumPy |
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All |
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17:00:00 |
Close |
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Tues |
10:00:00 |
Lecture 3: Null space and elementary modes |
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TBD |
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P3. Null space, subsets and elementary modes |
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All |
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12:30:00 |
Lunch |
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Lecture 4: Linear programming and Flux Balance Analysis |
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TBD |
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P4. Central metabolism of S. epidermidis |
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All |
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17:00:00 |
Close |
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Wed |
10:00:00 |
Lecture 5: Determination of minimal media requirements for Campylobacter jejuni |
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DS |
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P5: Determination of minimal media requirements for Campylobacter jejuni |
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All |
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12:30:00 |
Lunch |
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Lecture 6: Phaeodactylum tricornutm for biofuel synthesis |
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DS |
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P5: Continued |
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All |
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17:00:00 |
Close |
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12:30:00 |
Lunch |
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P6. Identifying pathways for TAG synthesis in P. tricornutm |
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All |
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17:00:00 |
Closing dinner |
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