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| * Dr Anu Raghunathan (AR: NCL, Pune) | |
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| == Guest Speaker == TBD ||<(v height="17px">'''Day'''||<(v>'''Time'''||<(v>'''Activity'''||<(v>'''Links'''||<(v>'''Tutor'''|| ||<(v height="17px">Day 1 – Monday||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">AM||<)v>09:30:00||<(v>Arrival, Admin etc ||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px"> ||<)>10:00:00||<(>Welcome and introduction to the course - why do modelling?||<(> ||<(>MP|| ||<( height="17px"> ||<)>10:30:00||<(v>Lecture 1: Introduction to metabolic modelling. ||<(> ||<(>TBD|| ||<( height="17px"> ||<(> ||<(v>Lecture 2: Python and computational representation of metabolic networks.||<(> ||<(>TBD|| ||<( height="17px"> ||<(> ||<(v>P1. Computers: checking internet connectivity, software installation.||<(> ||<(>All|| ||<(v height="17px"><<BR>>||<)v>12:00:00||<(v>Lunch ||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">PM||<)v>13:00:00||<(v>P1. Contd.||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>13:30:00||<(>P2. Python and ScrumPy||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px"> ||<(> ||<(> ||<(> ||<(> || ||<(v height="17px">Day 2 – Tuesday||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">AM||<)v>10:00:00||<(v>Lecture 3: Null space, elementary modes and conserved cycles||<(v><<BR>>||<(v>TBD|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>P3. Null space, subsets and elementary modes||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>12:00:00||<(v>Lunch||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">PM||<)v>13:00:00||<(v>Lecture 4: Linear programming and Flux Balance Analysis||<(v><<BR>>||<(v>TBD|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>P4. LP – Central metabolism of Staphylococcus epidermidis||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px"> ||<(> ||<(> ||<(> ||<(> || ||<(v height="17px">Day 3 – Wednesday||<(> ||<(> ||<(> ||<(> || ||<(v height="17px">AM||<)v>10:00:00||<(v>Lecture 5: Construction, Validation and Applications of GSMs||<(v><<BR>>||<(v>DS|| ||<(v height="17px"><<BR>>||<)v>11:00:00||<(v>Lecture 6: Antimicrobial resistance mechanism in E.coli||<(v><<BR>>||<(v>PV|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>Lunch||<(v><<BR>>||<(v><<BR>>|| ||<( height="17px">PM||<)v>13:00:00||<(v>P5: LP – Antimicrobial resistance ||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>15:00:00||<(v>Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied.||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px"><<BR>>||<(> ||<(> ||<(> ||<(> || ||<( height="17px"> ||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">Day 4 – Thursday||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">AM||<)v>10:00:00||<(v>Participants to present the outcome of the group discussion||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<(v><<BR>>||<(v>Lunch||<(v><<BR>>||<(v><<BR>>|| ||<(v height="17px">PM||<)v>13:00:00||<(v>Lecture 7: Determination of minimal media requirements for Campylobacter jejuni||<(v><<BR>>||<(v>DS|| ||<(v height="17px"><<BR>>||<)v>14:00:00||<(v>P6: Determination of minimal media requirements for Campylobacter jejuni||<(v><<BR>>||<(v>All|| ||<(v height="17px"><<BR>>||<)v>17:00:00||<(v>Close||<(v><<BR>>||<(v><<BR>>|| |
||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Day''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Time''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Activity''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Links''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Lecturer''' || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Mon''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Welcome and introduction to the course - why do modelling? ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">MP || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">PV/TD || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 2: Python and computational representation of metabolic networks. ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">TD || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P1. Computers: Checking internet connectivity, software installation. ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Close ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Tues''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 3: Null space and elementary modes ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">MP || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''<<BR>>''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P3. Null space, subsets and elementary modes ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 4: Linear programming and Flux Balance Analysis ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">MP || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P4. Central metabolism of S. epidermidis ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Close ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Wed''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 5: Determination of minimal media requirements for Campylobacter jejuni ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">DS || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P5: Determination of minimal media requirements for Campylobacter jejuni ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 6: Phaeodactylum tricornutm for biofuel synthesis ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">DS || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P5: Continued ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Close ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 36px& quot" ;&quot"">'''Thur''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>>10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>>Case study project presentation by the participants ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P6. Identifying pathways for TAG synthesis in P. tricornutm ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Closing dinner ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || |
This web page under is under construction.
Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Day |
Time |
Activity |
Links |
Lecturer |
Mon |
10:00 |
Welcome and introduction to the course - why do modelling? |
|
MP |
|
|
Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
|
PV/TD |
|
12:30 |
Lunch |
|
|
|
|
Lecture 2: Python and computational representation of metabolic networks. |
|
TD |
|
|
P1. Computers: Checking internet connectivity, software installation. |
|
All |
|
|
P2. Python and ScrumPy |
|
All |
|
17:00 |
Close |
|
|
Tues |
10:00 |
Lecture 3: Null space and elementary modes |
|
MP |
|
|
P3. Null space, subsets and elementary modes |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 4: Linear programming and Flux Balance Analysis |
|
MP |
|
|
P4. Central metabolism of S. epidermidis |
|
All |
|
17:00 |
Close |
|
|
Wed |
10:00 |
Lecture 5: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
|
P5: Determination of minimal media requirements for Campylobacter jejuni |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 6: Phaeodactylum tricornutm for biofuel synthesis |
|
DS |
|
|
P5: Continued |
|
All |
|
17:00 |
Close |
|
|
Thur |
|
|
|
|
|
12:30 |
Lunch |
|
|
|
|
P6. Identifying pathways for TAG synthesis in P. tricornutm |
|
All |
|
17:00 |
Closing dinner |
|
|