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| == Guest Speaker == TBD ||<height=""" style="text-align:left;17px";vertical-align:bottom">'''Day''' ||<style="text-align:left;vertical-align:bottom">'''Time''' ||<style="text-align:left;vertical-align:bottom">'''Activity''' ||<style="text-align:left;vertical-align:bottom">'''Links''' ||<style="text-align:left;vertical-align:bottom">'''Tutor''' || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 1 – Monday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">09:30:00 ||<style="text-align:left;vertical-align:bottom">Arrival, Admin etc ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:right">10:00:00 ||<style="text-align:left">Welcome and introduction to the course - why do modelling? ||<style="text-align:left"> ||<style="text-align:left">MP || ||<height=""" style="text-align:left;17px""> ||<style="text-align:right">10:30:00 ||<style="text-align:left;vertical-align:bottom">Lecture 1: Introduction to metabolic modelling. ||<style="text-align:left"> ||<style="text-align:left">TBD || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left;vertical-align:bottom">Lecture 2: Python and computational representation of metabolic networks. ||<style="text-align:left"> ||<style="text-align:left">TBD || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left;vertical-align:bottom">P1. Computers: checking internet connectivity, software installation. ||<style="text-align:left"> ||<style="text-align:left">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">12:00:00 ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">P1. Contd. ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">13:30:00 ||<style="text-align:left">P2. Python and ScrumPy ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 2 – Tuesday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 3: Null space, elementary modes and conserved cycles ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">TBD || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">P3. Null space, subsets and elementary modes ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">12:00:00 ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 4: Linear programming and Flux Balance Analysis ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">TBD || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">P4. LP – Central metabolism of Staphylococcus epidermidis ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 3 – Wednesday ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 5: Construction, Validation and Applications of GSMs ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">DS || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">11:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 6: Antimicrobial resistance mechanism in E.coli ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">PV || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px"">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">P5: LP – Antimicrobial resistance ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">15:00:00 ||<style="text-align:left;vertical-align:bottom">Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 4 – Thursday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Participants to present the outcome of the group discussion ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 7: Determination of minimal media requirements for Campylobacter jejuni ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">DS || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">14:00:00 ||<style="text-align:left;vertical-align:bottom">P6: Determination of minimal media requirements for Campylobacter jejuni ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || |
||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Day''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Time''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Activity''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Links''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">'''Lecturer''' || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Mon''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Welcome and introduction to the course - why do modelling? ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">MP || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">PV/TD || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 2: Python and computational representation of metabolic networks. ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">TD || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P1. Computers: Checking internet connectivity, software installation. ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Close ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Tues''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 3: Null space and elementary modes ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">MP || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''<<BR>>''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P3. Null space, subsets and elementary modes ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 4: Linear programming and Flux Balance Analysis ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">MP || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P4. Central metabolism of S. epidermidis ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Close ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot"">'''Wed''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 5: Determination of minimal media requirements for Campylobacter jejuni ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">DS || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P5: Determination of minimal media requirements for Campylobacter jejuni ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lecture 6: Phaeodactylum tricornutm for biofuel synthesis ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">DS || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P5: Continued ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Close ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 36px& quot" ;&quot"">'''Thur''' ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>>10:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>>Case study project presentation by the participants ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">12:30 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Lunch ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">P6. Identifying pathways for TAG synthesis in P. tricornutm ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">All || ||<height=""" style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left; 20px& quot" ;&quot""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:right"">17:00 ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left"">Closing dinner ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> ||<style="" & quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000& quot; ;text-align:left""><<BR>> || |
This web page under is under construction.
Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Day |
Time |
Activity |
Links |
Lecturer |
Mon |
10:00 |
Welcome and introduction to the course - why do modelling? |
|
MP |
|
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Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
|
PV/TD |
|
12:30 |
Lunch |
|
|
|
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Lecture 2: Python and computational representation of metabolic networks. |
|
TD |
|
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P1. Computers: Checking internet connectivity, software installation. |
|
All |
|
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P2. Python and ScrumPy |
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All |
|
17:00 |
Close |
|
|
Tues |
10:00 |
Lecture 3: Null space and elementary modes |
|
MP |
|
|
P3. Null space, subsets and elementary modes |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 4: Linear programming and Flux Balance Analysis |
|
MP |
|
|
P4. Central metabolism of S. epidermidis |
|
All |
|
17:00 |
Close |
|
|
Wed |
10:00 |
Lecture 5: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
|
P5: Determination of minimal media requirements for Campylobacter jejuni |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 6: Phaeodactylum tricornutm for biofuel synthesis |
|
DS |
|
|
P5: Continued |
|
All |
|
17:00 |
Close |
|
|
Thur |
|
|
|
|
|
12:30 |
Lunch |
|
|
|
|
P6. Identifying pathways for TAG synthesis in P. tricornutm |
|
All |
|
17:00 |
Closing dinner |
|
|