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== Guest Speaker ==
TBD
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">'''Day''' ||<style="text-align:left;vertical-align:bottom">'''Time''' ||<style="text-align:left;vertical-align:bottom">'''Activity''' ||<style="text-align:left;vertical-align:bottom">'''Links''' ||<style="text-align:left;vertical-align:bottom">'''Tutor''' ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">Day 1 – Monday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">09:30:00 ||<style="text-align:left;vertical-align:bottom">Arrival, Admin etc ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot"> ||<style="text-align:right">10:00:00 ||<style="text-align:left">Welcome and introduction to the course - why do modelling? ||<style="text-align:left"> ||<style="text-align:left">MP ||
||<height="&quot" style="text-align:left;17px&quot"> ||<style="text-align:right">10:30:00 ||<style="text-align:left;vertical-align:bottom">Lecture 1: Introduction to metabolic modelling. ||<style="text-align:left"> ||<style="text-align:left">TBD ||
||<height="&quot" style="text-align:left;17px&quot"> ||<style="text-align:left"> ||<style="text-align:left;vertical-align:bottom">Lecture 2: Python and computational representation of metabolic networks. ||<style="text-align:left"> ||<style="text-align:left">TBD ||
||<height="&quot" style="text-align:left;17px&quot"> ||<style="text-align:left"> ||<style="text-align:left;vertical-align:bottom">P1. Computers: checking internet connectivity, software installation. ||<style="text-align:left"> ||<style="text-align:left">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">12:00:00 ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">P1. Contd. ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">13:30:00 ||<style="text-align:left">P2. Python and ScrumPy ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">Day 2 – Tuesday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 3: Null space, elementary modes and conserved cycles ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">TBD ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">P3. Null space, subsets and elementary modes ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">12:00:00 ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 4: Linear programming and Flux Balance Analysis ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">TBD ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">P4. LP – Central metabolism of Staphylococcus epidermidis ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">Day 3 – Wednesday ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 5: Construction, Validation and Applications of GSMs ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">DS ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">11:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 6: Antimicrobial resistance mechanism in E.coli ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">PV ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">P5: LP – Antimicrobial resistance ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">15:00:00 ||<style="text-align:left;vertical-align:bottom">Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||
||<height="&quot" style="text-align:left;17px&quot"> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">Day 4 – Thursday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Participants to present the outcome of the group discussion ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 7: Determination of minimal media requirements for Campylobacter jejuni ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">DS ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">14:00:00 ||<style="text-align:left;vertical-align:bottom">P6: Determination of minimal media requirements for Campylobacter jejuni ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All ||
||<height="&quot" style="text-align:left;17px&quot;;vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||

 ||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Day''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Time''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Activity''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Links''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Lecturer''' ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Mon''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Welcome and introduction to the course - why do modelling? ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">MP ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">PV/TD ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 2: Python and computational representation of metabolic networks. ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">TD ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P1. Computers: Checking internet connectivity, software installation. ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">[[https://mudshark.brookes.ac.uk/Meetings/Nepal2024/ScrumPyInstall|Prac1]] ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Close ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Tues''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 3: Null space and elementary modes ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">MP ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''<<BR>>''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P3. Null space, subsets and elementary modes ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 4: Linear programming and Flux Balance Analysis ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">MP ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P4. Central metabolism of S. epidermidis ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Close ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Wed''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 5: Determination of minimal media requirements for Campylobacter jejuni ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">DS ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P5: Determination of minimal media requirements for Campylobacter jejuni ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 6: Phaeodactylum tricornutm for biofuel synthesis ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">DS ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P5: Continued ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Close ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 36px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Thur''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>>10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>>Case study project presentation by the participants ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P6. Identifying pathways for TAG synthesis in P. tricornutm ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Closing dinner ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||

This web page under is under construction.

Innotargets: Introduction to Metabolic Modelling

India 2024

Tutors

  • Dr Mark Poolman (MP: Oxford Brookes University)
  • Dr Dipali Singh (DS: Quadram Institute, Norwich)
  • Pareena Verma (PV: Oxford Brookes University)
  • Dr Trunil Desai (TD: Oxford Brookes University)

Day

Time

Activity

Links

Lecturer

Mon

10:00

Welcome and introduction to the course - why do modelling?


MP



Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks.


PV/TD


12:30

Lunch





Lecture 2: Python and computational representation of metabolic networks.


TD



P1. Computers: Checking internet connectivity, software installation.

Prac1

All



P2. Python and ScrumPy


All


17:00

Close



Tues

10:00

Lecture 3: Null space and elementary modes

MP



P3. Null space, subsets and elementary modes


All


12:30

Lunch





Lecture 4: Linear programming and Flux Balance Analysis


MP



P4. Central metabolism of S. epidermidis


All


17:00

Close



Wed

10:00

Lecture 5: Determination of minimal media requirements for Campylobacter jejuni


DS



P5: Determination of minimal media requirements for Campylobacter jejuni


All


12:30

Lunch





Lecture 6: Phaeodactylum tricornutm for biofuel synthesis


DS



P5: Continued


All


17:00

Close



Thur


10:00


Case study project presentation by the participants




12:30

Lunch





P6. Identifying pathways for TAG synthesis in P. tricornutm


All


17:00

Closing dinner



None: Meetings/Nepal2024/Timetable (last edited 2024-09-24 07:26:33 by dipali)