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| ||<height=""" style="text-align:left;17px";vertical-align:bottom">'''Day''' ||<style="text-align:left;vertical-align:bottom">'''Time''' ||<style="text-align:left;vertical-align:bottom">'''Activity''' ||<style="text-align:left;vertical-align:bottom">'''Links''' ||<style="text-align:left;vertical-align:bottom">'''Tutor''' || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 1 – Monday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">09:30:00 ||<style="text-align:left;vertical-align:bottom">Arrival, Admin etc ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:right">10:00:00 ||<style="text-align:left">Welcome and introduction to the course - why do modelling? ||<style="text-align:left"> ||<style="text-align:left">MP || ||<height=""" style="text-align:left;17px""> ||<style="text-align:right">10:30:00 ||<style="text-align:left;vertical-align:bottom">Lecture 1: Introduction to metabolic modelling. ||<style="text-align:left"> ||<style="text-align:left">TBD || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left;vertical-align:bottom">Lecture 2: Python and computational representation of metabolic networks. ||<style="text-align:left"> ||<style="text-align:left">TBD || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left;vertical-align:bottom">P1. Computers: checking internet connectivity, software installation. ||<style="text-align:left"> ||<style="text-align:left">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">12:00:00 ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">P1. Contd. ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">13:30:00 ||<style="text-align:left">P2. Python and ScrumPy ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 2 – Tuesday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 3: Null space, elementary modes and conserved cycles ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">TBD || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">P3. Null space, subsets and elementary modes ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">12:00:00 ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 4: Linear programming and Flux Balance Analysis ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">TBD || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">P4. LP – Central metabolism of Staphylococcus epidermidis ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 3 – Wednesday ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 5: Construction, Validation and Applications of GSMs ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">DS || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">11:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 6: Antimicrobial resistance mechanism in E.coli ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">PV || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px"">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">P5: LP – Antimicrobial resistance ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">15:00:00 ||<style="text-align:left;vertical-align:bottom">Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> ||<style="text-align:left"> || ||<height=""" style="text-align:left;17px""> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">Day 4 – Thursday ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">AM ||<style="text-align:right;vertical-align:bottom">10:00:00 ||<style="text-align:left;vertical-align:bottom">Participants to present the outcome of the group discussion ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">Lunch ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || ||<height=""" style="text-align:left;17px";vertical-align:bottom">PM ||<style="text-align:right;vertical-align:bottom">13:00:00 ||<style="text-align:left;vertical-align:bottom">Lecture 7: Determination of minimal media requirements for Campylobacter jejuni ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">DS || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">14:00:00 ||<style="text-align:left;vertical-align:bottom">P6: Determination of minimal media requirements for Campylobacter jejuni ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom">All || ||<height=""" style="text-align:left;17px";vertical-align:bottom"><<BR>> ||<style="text-align:right;vertical-align:bottom">17:00:00 ||<style="text-align:left;vertical-align:bottom">Close ||<style="text-align:left;vertical-align:bottom"><<BR>> ||<style="text-align:left;vertical-align:bottom"><<BR>> || |
||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">'''Day''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Time''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Activity''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Links''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Tutor''' || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 1 – Monday ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">09:30:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Arrival, Admin etc ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:right& quot; "">10:00:00 ||<style="" & quot;text-align:left& quot; "">Welcome and introduction to the course - why do modelling? ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">MP || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:right& quot; "">10:30:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 1: Introduction to metabolic modelling. ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 2: Python and computational representation of metabolic networks. ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P1. Computers: checking internet connectivity, software installation. ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">12:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P1. Contd. ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:30:00 ||<style="" & quot;text-align:left& quot; "">P2. Python and ScrumPy ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 2 – Tuesday ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">10:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 3: Null space, elementary modes and conserved cycles ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P3. Null space, subsets and elementary modes ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">12:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 4: Linear programming and Flux Balance Analysis ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P4. LP – Central metabolism of ''Staphylococcus epidermidis'' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 3 – Wednesday ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">10:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 5: Construction, Validation and Applications of GSMs ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">DS || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">11:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">PV || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P5: Antimicrobial target identification by GSMM - INNOTARGETS ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">15:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 4 – Thursday ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">10:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Participants to present the outcome of the group discussion ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 7: Determination of minimal media requirements for ''Campylobacter jejuni '' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">DS || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">14:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P6: Determination of minimal media requirements for ''Campylobacter jejuni '' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || |
This web page under is under construction.
Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
TBD
Day |
Time |
Activity |
Links |
Tutor |
Day 1 – Monday |
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AM |
09:30:00 |
Arrival, Admin etc |
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|
|
10:00:00 |
Welcome and introduction to the course - why do modelling? |
|
MP |
|
10:30:00 |
Lecture 1: Introduction to metabolic modelling. |
|
TBD |
|
|
Lecture 2: Python and computational representation of metabolic networks. |
|
TBD |
|
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P1. Computers: checking internet connectivity, software installation. |
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All |
|
12:00:00 |
Lunch |
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PM |
13:00:00 |
P1. Contd. |
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All |
|
13:30:00 |
P2. Python and ScrumPy |
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All |
|
17:00:00 |
Close |
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Day 2 – Tuesday |
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|
|
|
AM |
10:00:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
|
TBD |
|
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P3. Null space, subsets and elementary modes |
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All |
|
12:00:00 |
Lunch |
|
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PM |
13:00:00 |
Lecture 4: Linear programming and Flux Balance Analysis |
|
TBD |
|
|
P4. LP – Central metabolism of Staphylococcus epidermidis |
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All |
|
17:00:00 |
Close |
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|
|
Day 3 – Wednesday |
|
|
|
|
AM |
10:00:00 |
Lecture 5: Construction, Validation and Applications of GSMs |
|
DS |
|
11:00:00 |
Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS |
|
PV |
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|
Lunch |
|
|
PM |
13:00:00 |
P5: Antimicrobial target identification by GSMM - INNOTARGETS |
|
All |
|
15:00:00 |
Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. |
|
All |
|
17:00:00 |
Close |
|
|
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|
|
|
|
|
|
|
|
|
Day 4 – Thursday |
|
|
|
|
AM |
10:00:00 |
Participants to present the outcome of the group discussion |
|
All |
|
|
Lunch |
|
|
PM |
13:00:00 |
Lecture 7: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
14:00:00 |
P6: Determination of minimal media requirements for Campylobacter jejuni |
|
All |
|
17:00:00 |
Close |
|
|