Differences between revisions 20 and 22 (spanning 2 versions)
⇤ ← Revision 20 as of 2024-09-11 13:23:57 →
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Editor: trunil
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← Revision 22 as of 2024-09-11 13:26:02 → ⇥
Size: 30989
Editor: trunil
Comment:
Deletions are marked like this. Additions are marked like this.
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||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot">'''Day''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">'''Time''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">'''Activity''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">'''Links''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">'''Lecturer''' ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot">'''Mon''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">10:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Welcome and introduction to the course - why do modelling? ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">MP||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">PV/TD ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">12:30 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lunch ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lecture 2: Python and computational representation of metabolic networks. ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">TD ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">P1. Computers: Checking internet connectivity, software installation. ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">All ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">All ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">17:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Close ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot">'''Tues''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">10:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lecture 3: Null space and elementary modes ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">MP||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot">'''<<BR>>''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">P3. Null space, subsets and elementary modes ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">All ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">12:30 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lunch ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lecture 4: Linear programming and Flux Balance Analysis ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">MP ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">P4. Central metabolism of S. epidermidis ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">All ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">17:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Close ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot">'''Wed''' ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">10:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lecture 5: Determination of minimal media requirements for Campylobacter jejuni ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">DS ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">P5: Determination of minimal media requirements for Campylobacter jejuni ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">All ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">12:30 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lunch ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lecture 6: Phaeodactylum tricornutm for biofuel synthesis ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">DS ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">P5: Continued ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">All ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">17:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Close ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;36px&quot"><<BR>>Thur ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>>10:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>>Case study project presentation by the participants ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">12:30 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Lunch ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">P6. Identifying pathways for TAG synthesis in P. tricornutm ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">All ||
||<height="&quot" style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left;20px&quot"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:right">17:00 ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left">Closing dinner ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||<style="&quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&quot; ;text-align:left"><<BR>> ||		 ||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Day''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Time''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Activity''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Links''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">'''Lecturer''' ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Mon''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Welcome and introduction to the course - why do modelling? ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">MP ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">PV/TD ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 2: Python and computational representation of metabolic networks. ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">TD ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P1. Computers: Checking internet connectivity, software installation. ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">[[https://mudshark.brookes.ac.uk/Meetings/Nepal2024/ScrumPyInstall|Prac1]] ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Close ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left; 20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Tues''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 3: Null space and elementary modes ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">MP ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''<<BR>>''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P3. Null space, subsets and elementary modes ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 4: Linear programming and Flux Balance Analysis ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">MP ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P4. Central metabolism of S. epidermidis ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Close ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Wed''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 5: Determination of minimal media requirements for Campylobacter jejuni ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">DS ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P5: Determination of minimal media requirements for Campylobacter jejuni ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lecture 6: Phaeodactylum tricornutm for biofuel synthesis ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">DS ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P5: Continued ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Close ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  36px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot">'''Thur''' ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>>10:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>>Case study project presentation by the participants ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">12:30 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Lunch ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">P6. Identifying pathways for TAG synthesis in P. tricornutm ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">All ||
||<height="&quot" style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left;  20px&amp; amp; quot&amp; quot; ; &amp; amp; quot&amp; quot&quot; ;&amp;quot&quot"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:right&amp; quot; &quot;">17:00 ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;">Closing dinner ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||<style="&quot; &amp; quot; &amp; amp; quot;border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000&amp; amp; quot; ;text-align:left&amp; quot; &quot;"><<BR>> ||

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Innotargets: Introduction to Metabolic Modelling

India 2024

Tutors

  • Dr Mark Poolman (MP: Oxford Brookes University)
  • Dr Dipali Singh (DS: Quadram Institute, Norwich)
  • Pareena Verma (PV: Oxford Brookes University)
  • Dr Trunil Desai (TD: Oxford Brookes University)

Day

Time

Activity

Links

Lecturer

Mon

10:00

Welcome and introduction to the course - why do modelling?


MP



Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks.


PV/TD


12:30

Lunch





Lecture 2: Python and computational representation of metabolic networks.


TD



P1. Computers: Checking internet connectivity, software installation.

Prac1

All



P2. Python and ScrumPy


All


17:00

Close



Tues

10:00

Lecture 3: Null space and elementary modes

MP



P3. Null space, subsets and elementary modes


All


12:30

Lunch





Lecture 4: Linear programming and Flux Balance Analysis


MP



P4. Central metabolism of S. epidermidis


All


17:00

Close



Wed

10:00

Lecture 5: Determination of minimal media requirements for Campylobacter jejuni


DS



P5: Determination of minimal media requirements for Campylobacter jejuni


All


12:30

Lunch





Lecture 6: Phaeodactylum tricornutm for biofuel synthesis


DS



P5: Continued


All


17:00

Close



Thur


10:00


Case study project presentation by the participants




12:30

Lunch





P6. Identifying pathways for TAG synthesis in P. tricornutm


All


17:00

Closing dinner



None: Meetings/Nepal2024/Timetable (last edited 2024-09-24 07:26:33 by dipali)