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| == Guest Speaker == TBD ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">'''Day''' ||<style=""text-align:left;vertical-align:bottom"">'''Time''' ||<style=""text-align:left;vertical-align:bottom"">'''Activity''' ||<style=""text-align:left;vertical-align:bottom"">'''Links''' ||<style=""text-align:left;vertical-align:bottom"">'''Tutor''' || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">Day 1 – Monday ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">AM ||<style=""text-align:right;vertical-align:bottom"">09:30:00 ||<style=""text-align:left;vertical-align:bottom"">Arrival, Admin etc ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot" ;&quot""> ||<style=""text-align:right"">10:00:00 ||<style=""text-align:left"">Welcome and introduction to the course - why do modelling? ||<style=""text-align:left""> ||<style=""text-align:left"">MP || ||<height=""" style=""text-align:left; 17px& quot" ;&quot""> ||<style=""text-align:right"">10:30:00 ||<style=""text-align:left;vertical-align:bottom"">Lecture 1: Introduction to metabolic modelling. ||<style=""text-align:left""> ||<style=""text-align:left"">TBD || ||<height=""" style=""text-align:left; 17px& quot" ;&quot""> ||<style=""text-align:left""> ||<style=""text-align:left;vertical-align:bottom"">Lecture 2: Python and computational representation of metabolic networks. ||<style=""text-align:left""> ||<style=""text-align:left"">TBD || ||<height=""" style=""text-align:left; 17px& quot" ;&quot""> ||<style=""text-align:left""> ||<style=""text-align:left;vertical-align:bottom"">P1. Computers: checking internet connectivity, software installation. ||<style=""text-align:left""> ||<style=""text-align:left"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">12:00:00 ||<style=""text-align:left;vertical-align:bottom"">Lunch ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">PM ||<style=""text-align:right;vertical-align:bottom"">13:00:00 ||<style=""text-align:left;vertical-align:bottom"">P1. Contd. ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">13:30:00 ||<style=""text-align:left"">P2. Python and ScrumPy ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">17:00:00 ||<style=""text-align:left;vertical-align:bottom"">Close ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot" ;&quot""> ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">Day 2 – Tuesday ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">AM ||<style=""text-align:right;vertical-align:bottom"">10:00:00 ||<style=""text-align:left;vertical-align:bottom"">Lecture 3: Null space, elementary modes and conserved cycles ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">TBD || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">P3. Null space, subsets and elementary modes ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">12:00:00 ||<style=""text-align:left;vertical-align:bottom"">Lunch ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">PM ||<style=""text-align:right;vertical-align:bottom"">13:00:00 ||<style=""text-align:left;vertical-align:bottom"">Lecture 4: Linear programming and Flux Balance Analysis ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">TBD || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">P4. LP – Central metabolism of Staphylococcus epidermidis ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">17:00:00 ||<style=""text-align:left;vertical-align:bottom"">Close ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot" ;&quot""> ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">Day 3 – Wednesday ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">AM ||<style=""text-align:right;vertical-align:bottom"">10:00:00 ||<style=""text-align:left;vertical-align:bottom"">Lecture 5: Construction, Validation and Applications of GSMs ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">DS || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">11:00:00 ||<style=""text-align:left;vertical-align:bottom"">Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">PV || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">Lunch ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot" ;&quot"">PM ||<style=""text-align:right;vertical-align:bottom"">13:00:00 ||<style=""text-align:left;vertical-align:bottom"">P5: Antimicrobial target identification by GSMM - INNOTARGETS ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">15:00:00 ||<style=""text-align:left;vertical-align:bottom"">Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">17:00:00 ||<style=""text-align:left;vertical-align:bottom"">Close ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> ||<style=""text-align:left""> || ||<height=""" style=""text-align:left; 17px& quot" ;&quot""> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">Day 4 – Thursday ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">AM ||<style=""text-align:right;vertical-align:bottom"">10:00:00 ||<style=""text-align:left;vertical-align:bottom"">Participants to present the outcome of the group discussion ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">Lunch ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot"">PM ||<style=""text-align:right;vertical-align:bottom"">13:00:00 ||<style=""text-align:left;vertical-align:bottom"">Lecture 7: Determination of minimal media requirements for Campylobacter jejuni ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">DS || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">14:00:00 ||<style=""text-align:left;vertical-align:bottom"">P6: Determination of minimal media requirements for Campylobacter jejuni ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom"">All || ||<height=""" style=""text-align:left; 17px& quot; ;vertical-align:bottom" ;&quot""><<BR>> ||<style=""text-align:right;vertical-align:bottom"">17:00:00 ||<style=""text-align:left;vertical-align:bottom"">Close ||<style=""text-align:left;vertical-align:bottom""><<BR>> ||<style=""text-align:left;vertical-align:bottom""><<BR>> || |
||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px"">'''Day''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">'''Time''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">'''Activity''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">'''Links''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">'''Lecturer''' || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px"">'''Mon''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">10:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Welcome and introduction to the course - why do modelling? ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">MP|| ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">PV/TD || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">12:30 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lunch ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lecture 2: Python and computational representation of metabolic networks. ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">TD || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">P1. Computers: Checking internet connectivity, software installation. ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">All || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">P2. Python and [[https://mudshark.brookes.ac.uk/ScrumPy|ScrumPy]] ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">All || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">17:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Close ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px"">'''Tues''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">10:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lecture 3: Null space and elementary modes ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">MP|| ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px"">'''<<BR>>''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">P3. Null space, subsets and elementary modes ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">All || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">12:30 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lunch ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lecture 4: Linear programming and Flux Balance Analysis ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">MP || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">P4. Central metabolism of S. epidermidis ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">All || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">17:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Close ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px"">'''Wed''' ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">10:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lecture 5: Determination of minimal media requirements for Campylobacter jejuni ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">DS || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">P5: Determination of minimal media requirements for Campylobacter jejuni ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">All || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">12:30 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lunch ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lecture 6: Phaeodactylum tricornutm for biofuel synthesis ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">DS || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">P5: Continued ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">All || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">17:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Close ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;36px""><<BR>>Thur ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>>10:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>>Case study project presentation by the participants ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">12:30 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Lunch ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">P6. Identifying pathways for TAG synthesis in P. tricornutm ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">All || ||<height=""" style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left;20px""><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:right">17:00 ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left">Closing dinner ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> ||<style=""border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000" ;text-align:left"><<BR>> || |
This web page under is under construction.
Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Day |
Time |
Activity |
Links |
Lecturer |
Mon |
10:00 |
Welcome and introduction to the course - why do modelling? |
|
MP |
|
|
Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
|
PV/TD |
|
12:30 |
Lunch |
|
|
|
|
Lecture 2: Python and computational representation of metabolic networks. |
|
TD |
|
|
P1. Computers: Checking internet connectivity, software installation. |
|
All |
|
|
P2. Python and ScrumPy |
|
All |
|
17:00 |
Close |
|
|
Tues |
10:00 |
Lecture 3: Null space and elementary modes |
|
MP |
|
|
P3. Null space, subsets and elementary modes |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 4: Linear programming and Flux Balance Analysis |
|
MP |
|
|
P4. Central metabolism of S. epidermidis |
|
All |
|
17:00 |
Close |
|
|
Wed |
10:00 |
Lecture 5: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
|
P5: Determination of minimal media requirements for Campylobacter jejuni |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 6: Phaeodactylum tricornutm for biofuel synthesis |
|
DS |
|
|
P5: Continued |
|
All |
|
17:00 |
Close |
|
|
|
|
|
|
|
|
12:30 |
Lunch |
|
|
|
|
P6. Identifying pathways for TAG synthesis in P. tricornutm |
|
All |
|
17:00 |
Closing dinner |
|
|