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| ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">'''Day''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Time''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Activity''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Links''' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">'''Tutor''' || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 1 – Monday ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">09:30:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Arrival, Admin etc ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:right& quot; "">10:00:00 ||<style="" & quot;text-align:left& quot; "">Welcome and introduction to the course - why do modelling? ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">MP || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:right& quot; "">10:30:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 1: Introduction to metabolic modelling. ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 2: Python and computational representation of metabolic networks. ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P1. Computers: checking internet connectivity, software installation. ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">12:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P1. Contd. ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:30:00 ||<style="" & quot;text-align:left& quot; "">P2. Python and ScrumPy ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 2 – Tuesday ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">10:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 3: Null space, elementary modes and conserved cycles ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P3. Null space, subsets and elementary modes ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">12:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 4: Linear programming and Flux Balance Analysis ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">TBD || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P4. LP – Central metabolism of ''Staphylococcus epidermidis'' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 3 – Wednesday ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">10:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 5: Construction, Validation and Applications of GSMs ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">DS || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">11:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">PV || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P5: Antimicrobial target identification by GSMM - INNOTARGETS ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">15:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> ||<style="" & quot;text-align:left& quot; ""> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">Day 4 – Thursday ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">10:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Participants to present the outcome of the group discussion ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lunch ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">13:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Lecture 7: Determination of minimal media requirements for ''Campylobacter jejuni '' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">DS || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">14:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">P6: Determination of minimal media requirements for ''Campylobacter jejuni '' ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">All || ||<height=""" style="" & quot;text-align:left; 17px& amp; quot; ;vertical-align:bottom& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot;text-align:right;vertical-align:bottom& quot; "">17:00:00 ||<style="" & quot;text-align:left;vertical-align:bottom& quot; "">Close ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> ||<style="" & quot;text-align:left;vertical-align:bottom& quot; ""><<BR>> || |
||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">'''Day''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">'''Time''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">'''Activity''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">'''Links''' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">'''Tutor''' || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">Day 1 – Monday ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">09:30:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Arrival, Admin etc ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:right& amp; quot; & quot; "">10:00:00 ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; "">Welcome and introduction to the course - why do modelling? ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; "">MP || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:right& amp; quot; & quot; "">10:30:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lecture 1: Introduction to metabolic modelling. ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; "">PV/TD || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lecture 2: Python and computational representation of metabolic networks. ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; "">TD || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">P1. Computers: checking internet connectivity, software installation. ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">12:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lunch ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">13:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">P1. Contd. ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">13:30:00 ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; "">P2. Python and ScrumPy ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">17:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Close ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">Day 2 – Tuesday ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">10:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lecture 3: Null space, elementary modes and conserved cycles ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">MP || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">P3. Null space, subsets and elementary modes ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">12:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lunch ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">13:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lecture 4: Linear programming and Flux Balance Analysis ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">MP || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">P4. LP – Central metabolism of ''Staphylococcus epidermidis'' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">17:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Close ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">Day 3 – Wednesday ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">10:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lecture 5: Construction, Validation and Applications of GSMs ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">DS || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">11:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">PV || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lunch ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">13:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">P5: Antimicrobial target identification by GSMM - INNOTARGETS ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">15:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">17:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Close ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> ||<style="" & quot; & amp; quot;text-align:left& amp; quot; & quot; ""> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">Day 4 – Thursday ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">AM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">10:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Participants to present the outcome of the group discussion ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lunch ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot"">PM ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">13:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Lecture 7: Determination of minimal media requirements for ''Campylobacter jejuni '' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">DS || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">14:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">P6: Determination of minimal media requirements for ''Campylobacter jejuni '' ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">All || ||<height=""" style="" & quot; & amp; quot;text-align:left; 17px& amp; amp; quot; ;vertical-align:bottom& amp; quot; ; & amp; amp; quot& amp; quot& quot; ; & amp; quot& quot" ;&quot""><<BR>> ||<style="" & quot; & amp; quot;text-align:right;vertical-align:bottom& amp; quot; & quot; "">17:00:00 ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; "">Close ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> ||<style="" & quot; & amp; quot;text-align:left;vertical-align:bottom& amp; quot; & quot; ""><<BR>> || |
This web page under is under construction.
Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
TBD
Day |
Time |
Activity |
Links |
Tutor |
Day 1 – Monday |
|
|
|
|
AM |
09:30:00 |
Arrival, Admin etc |
|
|
|
10:00:00 |
Welcome and introduction to the course - why do modelling? |
|
MP |
|
10:30:00 |
Lecture 1: Introduction to metabolic modelling. |
|
PV/TD |
|
|
Lecture 2: Python and computational representation of metabolic networks. |
|
TD |
|
|
P1. Computers: checking internet connectivity, software installation. |
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All |
|
12:00:00 |
Lunch |
|
|
PM |
13:00:00 |
P1. Contd. |
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All |
|
13:30:00 |
P2. Python and ScrumPy |
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All |
|
17:00:00 |
Close |
|
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|
|
Day 2 – Tuesday |
|
|
|
|
AM |
10:00:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
|
MP |
|
|
P3. Null space, subsets and elementary modes |
|
All |
|
12:00:00 |
Lunch |
|
|
PM |
13:00:00 |
Lecture 4: Linear programming and Flux Balance Analysis |
|
MP |
|
|
P4. LP – Central metabolism of Staphylococcus epidermidis |
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All |
|
17:00:00 |
Close |
|
|
|
|
|
|
|
Day 3 – Wednesday |
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|
|
|
AM |
10:00:00 |
Lecture 5: Construction, Validation and Applications of GSMs |
|
DS |
|
11:00:00 |
Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS |
|
PV |
|
|
Lunch |
|
|
PM |
13:00:00 |
P5: Antimicrobial target identification by GSMM - INNOTARGETS |
|
All |
|
15:00:00 |
Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. |
|
All |
|
17:00:00 |
Close |
|
|
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|
|
|
|
|
|
|
|
|
Day 4 – Thursday |
|
|
|
|
AM |
10:00:00 |
Participants to present the outcome of the group discussion |
|
All |
|
|
Lunch |
|
|
PM |
13:00:00 |
Lecture 7: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
14:00:00 |
P6: Determination of minimal media requirements for Campylobacter jejuni |
|
All |
|
17:00:00 |
Close |
|
|