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Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Day |
Time |
Activity |
Links |
Lecturer |
Mon |
10:00 |
Welcome and introduction to the course - why do modelling? |
|
MP |
|
|
Lecture 1: Introduction to metabolic modelling. Mathematical representation of metabolic networks. |
|
PV/TD |
|
12:30 |
Lunch |
|
|
|
|
Lecture 2: Python and computational representation of metabolic networks. |
|
TD |
|
|
P1. Computers: Checking internet connectivity, software installation. |
All |
|
|
|
P2. Python and ScrumPy |
|
All |
|
17:00 |
Close |
|
|
Tues |
10:00 |
Lecture 3: Null space and elementary modes |
|
MP |
|
|
P3. Null space, subsets and elementary modes |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 4: Linear programming and Flux Balance Analysis |
|
MP |
|
|
P4. Central metabolism of S. epidermidis |
|
All |
|
17:00 |
Close |
|
|
Wed |
10:00 |
Lecture 5: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
|
P5: Determination of minimal media requirements for Campylobacter jejuni |
|
All |
|
12:30 |
Lunch |
|
|
|
|
Lecture 6: Phaeodactylum tricornutm for biofuel synthesis |
|
DS |
|
|
P5: Continued |
|
All |
|
17:00 |
Close |
|
|
Thur |
|
|
|
|
|
12:30 |
Lunch |
|
|
|
|
P6. Identifying pathways for TAG synthesis in P. tricornutm |
|
All |
|
17:00 |
Closing dinner |
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