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Innotargets: Introduction to Metabolic Modelling
India 2024
Tutors
- Dr Mark Poolman (MP: Oxford Brookes University)
- Dr Dipali Singh (DS: Quadram Institute, Norwich)
- Pareena Verma (PV: Oxford Brookes University)
- Dr Trunil Desai (TD: Oxford Brookes University)
Guest Speaker
TBD
Day |
Time |
Activity |
Links |
Tutor |
Day 1 – Monday |
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AM |
09:30:00 |
Arrival, Admin etc |
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10:00:00 |
Welcome and introduction to the course - why do modelling? |
|
MP |
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10:30:00 |
Lecture 1: Introduction to metabolic modelling. |
PV/TD |
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Lecture 2: Python and computational representation of metabolic networks. |
TD |
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P1. Computers: checking internet connectivity, software installation. |
All |
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12:00:00 |
Lunch |
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PM |
13:00:00 |
P1. Contd. |
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All |
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13:30:00 |
P2. Python and ScrumPy |
All |
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17:00:00 |
Close |
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Day 2 – Tuesday |
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AM |
10:00:00 |
Lecture 3: Null space, elementary modes and conserved cycles |
MP |
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P3. Null space, subsets and elementary modes |
All |
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12:00:00 |
Lunch |
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PM |
13:00:00 |
Lecture 4: Linear programming and Flux Balance Analysis |
MP |
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P4. LP – Central metabolism of Staphylococcus epidermidis |
All |
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17:00:00 |
Close |
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Day 3 – Wednesday |
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AM |
10:00:00 |
Lecture 5: Construction, Validation and Applications of GSMs |
|
DS |
|
11:00:00 |
Lecture 6: Antimicrobial target identification by GSMM - INNOTARGETS |
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PV/MP |
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Lunch |
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PM |
13:00:00 |
P5: Antimicrobial target identification by GSMM - INNOTARGETS |
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All |
|
15:00:00 |
Group discussion: Please form a group of 4-5 to discuss project ideas where metabolic modelling can be applied. |
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All |
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17:00:00 |
Close |
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Day 4 – Thursday |
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AM |
10:00:00 |
Participants to present the outcome of the group discussion |
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All |
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Lunch |
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PM |
13:00:00 |
Lecture 7: Determination of minimal media requirements for Campylobacter jejuni |
|
DS |
|
14:00:00 |
P6: Determination of minimal media requirements for Campylobacter jejuni |
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All |
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17:00:00 |
Close |
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