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=== Lecture slides === === David Fell's Lecture slides ===
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 1. Application of linear programming to plant metabolism
 1. Analysis of photorespiration.		  1. Application of linear programming to plant metabolism:
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2i.pdf|Summary of photosynthetic metabolism]]
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2aLP.pdf|Revision of LP/FBA, with additional analysis techniques]]
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2b.pdf|Application of FBA to a GSM of rice]]
  1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L2cAraGSM.pdf|Explaining metabolism of Calvin Cycle knokouts with a GSM of Arabidopsis]]
 1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/L3.pdf|Analysis of photorespiration]].
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 1. [[http://mudsharkstatic.brookes.ac.uk/Lisbon2018/Exercise1.pdf|Pathway construction exercise 1]]

Portugal PhD Programme, Systems Biology Module

Metabolic Modelling with reference to Plant Biochemistry

David Fell's Lecture slides

  1. Introductory lecture; elementary modes analysis

  2. Application of linear programming to plant metabolism:

    1. Summary of photosynthetic metabolism

    2. Revision of LP/FBA, with additional analysis techniques

    3. Application of FBA to a GSM of rice

    4. Explaining metabolism of Calvin Cycle knokouts with a GSM of Arabidopsis

  3. Analysis of photorespiration.

Other resources

  1. Pathway construction exercise 1

None: Meetings/PortugalSysBio (last edited 2018-02-07 17:15:11 by david)