Portugal PhD Programme, Systems Biology Module

Metabolic Modelling with reference to Plant Biochemistry

David Fell's Lecture slides

1. Introductory lecture; elementary modes analysis

2. Application of linear programming to plant metabolism:

   1. Summary of photosynthetic metabolism

   2. Revision of LP/FBA, with additional analysis techniques

   3. Application of FBA to a GSM of rice

   4. Explaining metabolism of Calvin Cycle knokouts with a GSM of Arabidopsis

3. Analysis of photorespiration.

Other resources

1. Pathway construction exercise 1