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{{attachment:metamod.png||width="500"}} The two options for installing !ScrumPy on your computer are to directly install the package on a suitable Linux operating system, or to run a virtual machine under other operating system. Instructions are [[/ScrumPyVM|here]]. |
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||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">15:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 0:''' Checking !ScrumPy Installation and Familiarisation ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P0|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All || | ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">15:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 0:''' Checking !ScrumPy installation and familiarisation ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P0|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All || |
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MetaMod 2016
Metabolic Modelling Workshop, NCL, Pune
14-16 March 2016
The two options for installing ScrumPy on your computer are to directly install the package on a suitable Linux operating system, or to run a virtual machine under other operating system. Instructions are here.
Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!
Follow this link if you wish to install ScrumPy on a Linux computer.
Timetable (Subject to Change)
Mornings, 9:30 -12:30 (Monday 11:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)
Day |
Time |
Activity |
Resources |
Who |
Mon 14th, AM |
11:00 |
Registration and admin |
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11:20 |
Welcome Talk |
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Anu + Mark |
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11:30 |
Talk: Introductory theory |
Mark |
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12:30 |
Lunch |
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All |
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Mon 14th, PM |
14:00 |
Talk: Python, object-orientation and models. |
Mark |
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15:00 |
Practical 0: Checking ScrumPy installation and familiarisation |
All |
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17:00 |
Close |
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Tue 15th, AM |
09:30 |
Talk: Structural analysis of small models. |
David |
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10:30 |
Practical 1: Structural analysis of small models |
All |
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12:30 |
Lunch |
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Tue 15th, PM |
14:00 |
Talk: Algorithms for calculating Elementary Modes |
Hassan |
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15:00 |
Talk: Linear Programming and Genome Scale Models |
Mark |
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16:00 |
Practical 1: (continued) |
All |
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17:00 |
Close |
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Wed 16th, AM |
09:30 |
Talk: Biotechnological Applications of Metabolic Network Analysis |
David |
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10:30 |
Talk: Analysis of GSMs - Novel antibiotic targets |
Hassan |
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11:30 |
Practical 2: Identifying Novel Antibiotic Targets in Salmonella |
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12:30 |
Lunch |
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Wed 16th, PM |
14:00 |
Practical 2: (continued) |
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15:30 |
Talk: Metabolic engineering of Geobacillus |
Hassan |
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16:30 |
Concluding remarks and presentation of certificates |
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17:00 |
Close |
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