Differences between revisions 49 and 50

MetaMod 2016

Metabolic Modelling Workshop, NCL, Pune

14-16 March 2016

The two options for installing ScrumPy on your computer are to directly install the package on a suitable Linux operating system, or to run a virtual machine under other operating system. Instructions are here.

Timetable (Subject to Change)

Mornings, 9:30 -12:30 (Monday 11:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)

Day	Time	Activity	Resources	Who
Mon 14th, AM	11:00	Registration and admin
	11:20	Welcome Talk		Anu + Mark
	11:30	Talk: Introductory theory	Slides	Mark
	12:30	Lunch		All
Mon 14th, PM	14:00	Talk: Python, object-orientation and models.	Slides	Mark
	15:00	Practical 0: Checking ScrumPy installation and familiarisation	Instructions	All
	17:00	Close
Tue 15th, AM	09:30	Talk: Structural analysis of small models.	Slides	David
	10:30	Practical 1: Structural analysis of small models	Instructions	All
	12:30	Lunch
Tue 15th, PM	14:00	Talk: Algorithms for calculating Elementary Modes	Slides	Hassan
	15:00	Talk: Linear Programming and Genome Scale Models	Slides	Mark
	16:00	Practical 1: (continued)	Instructions	All
	17:00	Close
Wed 16th, AM	09:30	Talk: Biotechnological Applications of Metabolic Network Analysis	Slides	David
	10:30	Talk: Analysis of GSMs - Novel antibiotic targets	Slides	Hassan
	11:30	Practical 2: Identifying Novel Antibiotic Targets in Salmonella	Instructions
	12:30	Lunch
Wed 16th, PM	14:00	Practical 2: (continued)	Instructions
	15:30	Talk: Metabolic engineering of Geobacillus	Slides	Hassan
	16:30	Concluding remarks and presentation of certificates
	17:00	Close

-  ⇤ ← Revision 49 as of 2016-03-14 06:38:19 → 
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+   ← Revision 50 as of 2016-03-16 05:20:26 → ⇥
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  Editor: mark
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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-The two options for installing !ScrumPy on your computer are to directly install the package on a suitable Linux operating system, or to run a virtual machine under other operating system.  Instructions are [[/ScrumPyVM|here]].
+The two options for installing !ScrumPy on your computer are to directly install the package on a suitable Linux operating system, or to run a virtual machine under other operating system.  Instructions are [[Meetings/Pune2016/ScrumPyVM|here]].
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-||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">15:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 0:''' Checking !ScrumPy installation and familiarisation ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P0|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
+||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">15:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 0:''' Checking !ScrumPy installation and familiarisation ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[Meetings/Pune2016/P0|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
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-||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">10:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 1''': Structural analysis of small models ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P1|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
+||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">10:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 1''': Structural analysis of small models ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[Meetings/Pune2016/P1|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
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-||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">16:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 1''': (continued) ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P1|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
+||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">16:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 1''': (continued) ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[Meetings/Pune2016/P1|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
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-||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">11:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 2: '''Identifying Novel Antibiotic Targets in                         Salmonella ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P2|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">                        ||
+||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">11:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 2: '''Identifying Novel Antibiotic Targets in                         Salmonella ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[Meetings/Pune2016/P2|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">                        ||
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-||<width="73px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |4>Wed 16th, PM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">14:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 2''': (continued) ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P2|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">                        ||
+||<width="73px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |4>Wed 16th, PM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">14:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 2''': (continued) ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[Meetings/Pune2016/P2|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">                        ||
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