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= Modelling Workshop, Pune, 2016 =
Download the [[http://mudsharkstatic.brookes.ac.uk/Download/opt/ScrumPy-vm.ova|Virtualbox image]] and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!		 = MetaMod 2016 =
== Metabolic Modelling Workshop, NCL, Pune ==
=== 14-16 March 2016 ===

{{attachment:metamod.png||width=200}}

Download the [[http://mudsharkstatic.brookes.ac.uk/Download/opt/ScrumPy-vm.ova|Virtualbox image]]  and import it into virtual box (File/Import appliance). There is single  user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is  also the root password. This image is for pre-workshop testing and may  well change!
Line 6: Line 11:
== More details will appear here real soon! ==
Mornings, 9:30 -12:30 (Monday 10:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)

||'''Time''' ||'''Activity''' ||'''Who''' ||
||Mon 14th, AM || Registration and admin|| ||
||Mon 14th, PM ||Indroductory theory Python, object-orientation and models. Checking ScrumPy installation (practical 0). || ||
||Tue 15th, AM ||Structural analysis of small models (talk) Structural analysis of small models (practical 1) || ||
|| Tue 15th, PM||Construction of Genome-scale models. (talk) Intro LP/FBA (talk) Practical 1 continued || ||
||Wed 16th, AM ||[[http://mudsharkstatic.brookes.ac.uk/Delhi2013/Slides/wshop2_mca3.pdf|Case studies in biotechnology and metabolic engineering]] (link need updating!) Analysis of GSMs (talk) Analysis of GSMs (practical 2) || ||
||Wed 16th, PM ||Practical 2 continued Concluding talk - (presentation of certificates ?) || ||		 == Timetable (Subject to Change) ==
Mornings, 9:30 -12:30 (Monday 11:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)
||<tablewidth="1177px" tableheight="550px"width="73px" style="border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0.05cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Day''' ||<width="66px" style="border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0.05cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Time''' ||<width="442px" style="border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0.05cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Activity''' ||<width="86px" style="border-top:1px solid #000000;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0.05cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Resources''' ||<width="82px" style="border:1px solid #000000;padding:0.05cm">'''Who''' ||
||<width="73px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |4>Mon 14th, AM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">11:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Registration and admin ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">11:20 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Welcome Talk ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">Anu + Mark ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">11:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Introductory theory ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L1/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">Mark ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">12:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Lunch ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
||<width="73px" height="40px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |3>Mon 14th, PM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">14:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Python, object-orientation and models. ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L2/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">Mark ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">15:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 0:''' Checking !ScrumPy Installation and Familiarisation ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P0|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">17:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Close ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="73px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |3>Tue 15th, AM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">09:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Structural analysis of small models. ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L3/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">David ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">10:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 1''': Structural analysis of small models ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P1|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">12:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Lunch ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="73px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |4>Tue 15th, PM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">14:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Algorithms for calculating Elementary Modes ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L4/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">Hassan ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">15:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Linear Programming and Genome Scale Models ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L5/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">Mark ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">16:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 1''': (continued) ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P1|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">All ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">17:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Close ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="73px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |4>Wed 16th, AM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">09:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Biotechnological Applications of Metabolic Network Analysis ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L6/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">David ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">10:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Analysis of GSMs - Novel antibiotic targets ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L7/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">Hassan ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">11:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 2: '''Identifying Novel Antibiotic Targets in Salmonella ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P2|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">12:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Lunch ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="73px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm;text-align:center" |4>Wed 16th, PM ||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">14:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Practical 2''': (continued) ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudshark.brookes.ac.uk/Meetings/Pune2016/P2|Instructions]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">15:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Talk:''' Metabolic engineering of Geobacillus ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">[[http://mudsharkstatic.brookes.ac.uk/Pune2016/L8/Slides.pdf|Slides]] ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm">Hassan ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">16:30 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">Concluding remarks and presentation of certificates ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||
||<width="66px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">17:00 ||<width="442px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm">'''Close''' ||<width="86px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:none;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0cm"> ||<width="82px" style="border-top:none;border-bottom:1px solid #000000;border-left:1px solid #000000;border-right:1px solid #000000;padding-top:0cm;padding-bottom:0.05cm;padding-left:0.05cm;padding-right:0.05cm"> ||

MetaMod 2016

Metabolic Modelling Workshop, NCL, Pune

14-16 March 2016

metamod.png

Download the Virtualbox image and import it into virtual box (File/Import appliance). There is single user with the id 'scrumpy' with the password 'scrumpy'. 'scrumpy' is also the root password. This image is for pre-workshop testing and may well change!

Follow this link if you wish to install ScrumPy on a Linux computer.

Timetable (Subject to Change)

Mornings, 9:30 -12:30 (Monday 11:00 - 12:30); Lunch 12:30 - 14:00; Afternoons, 14:00 - 17:00 (at the latest)

Day

Time

Activity

Resources

Who

Mon 14th, AM

11:00

Registration and admin

11:20

Welcome Talk

Anu + Mark

11:30

Talk: Introductory theory

Slides

Mark

12:30

Lunch

All

Mon 14th, PM

14:00

Talk: Python, object-orientation and models.

Slides

Mark

15:00

Practical 0: Checking ScrumPy Installation and Familiarisation

Instructions

All

17:00

Close

Tue 15th, AM

09:30

Talk: Structural analysis of small models.

Slides

David

10:30

Practical 1: Structural analysis of small models

Instructions

All

12:30

Lunch

Tue 15th, PM

14:00

Talk: Algorithms for calculating Elementary Modes

Slides

Hassan

15:00

Talk: Linear Programming and Genome Scale Models

Slides

Mark

16:00

Practical 1: (continued)

Instructions

All

17:00

Close

Wed 16th, AM

09:30

Talk: Biotechnological Applications of Metabolic Network Analysis

Slides

David

10:30

Talk: Analysis of GSMs - Novel antibiotic targets

Slides

Hassan

11:30

Practical 2: Identifying Novel Antibiotic Targets in Salmonella

Instructions

12:30

Lunch

Wed 16th, PM

14:00

Practical 2: (continued)

Instructions

15:30

Talk: Metabolic engineering of Geobacillus

Slides

Hassan

16:30

Concluding remarks and presentation of certificates

17:00

Close

None: Meetings/Pune2016 (last edited 2016-03-16 05:20:26 by mark)