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 Our models are generally developed and analysed using [[./ScrumPy|ScrumPy]], and the ScrumPy source files are human--readable text files (*.spy). (Unless otherwise stated, these files will have Linux/MacOS line ends, and Windows users should either convert the line ends or open them with a text editor that copes with the difference.)

 SBML forms are provided for compatibility.		  . Our models are generally developed and analysed using [[./ScrumPy|ScrumPy]], and the ScrumPy source files are human--readable text files (*.spy). (Unless otherwise stated, these files will have Linux/MacOS line ends, and Windows users should either convert the line ends or open them with a text editor that copes with the difference.) SBML forms are provided for compatibility.
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 These model files contain the metabolic network structure only. Constraints (including biomass composition) and objectives for analysis by linear programming / FBA are in associated Python modules to be used in conjunction with !ScrumPy. Contact us for further details.

 [[Models/Geobac|Geobacillus]]

 [[Models/EcoliCCM|E coli central carbon metabolism with alkane synthesis]]		  . These model files contain the metabolic network structure only. Constraints (including biomass composition) and objectives for analysis by linear programming / FBA are in associated Python modules to be used in conjunction with !ScrumPy. Contact us for further details.
  * [[Models/Geobac|Geobacillus]] thermoglucosidasius
  * [[Models/EcoliCCM|E coli central carbon metabolism with alkane synthesis]]
 .

Model Repository

(Under construction)

  • Our models are generally developed and analysed using ScrumPy, and the ScrumPy source files are human--readable text files (*.spy). (Unless otherwise stated, these files will have Linux/MacOS line ends, and Windows users should either convert the line ends or open them with a text editor that copes with the difference.) SBML forms are provided for compatibility.

Structural Models

  • These model files contain the metabolic network structure only. Constraints (including biomass composition) and objectives for analysis by linear programming / FBA are in associated Python modules to be used in conjunction with ScrumPy. Contact us for further details.

Kinetic Models

None: Models (last edited 2018-02-09 10:10:26 by david)