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| = ScrumPy Documentation = |
## page was renamed from Software/ScrumPy/Doc = ScrumPy Manual = |
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=== Why Python ? === 'cause it's great. |
=== Metabolic Modelling === === Design Philosophy === === Python === ==== Knowing syntax vs programming ==== ==== Inbuilt types and classes ==== ==== Classes and sub-classes ==== ==== Repetiton and Descissions ==== ==== Modules and Packages ==== == ScrumPy Model Description Language == === Overview === === Identifiers === === Reactions === === Directives === |
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| === What ScrumPy Is === === What ScrumPy Isn't === === Quick examples === == ScrumPy model format == == Structural Analysis of Models == == Kinetic Analysis of Models == |
== Analysis of Models With ScrumPy == === The ScrumPy Modelling Environment === === The Matrix Class === Fully described in utility section - enough here to understand SMs, datasets and monitors. === Anatomy of a ScrumPy Model === === Kinetic Modelling === === Structural Modelling === === Linear Programming === == Secondary Analysis of Model Results == === Data sets === === Fitting and Optimisation === == Automatic Model Building == |
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| == The Utility Package == === Dynamic Matrices === |
ScrumPy Manual
Introduction
Metabolic Modelling
Design Philosophy
Python
Knowing syntax vs programming
Inbuilt types and classes
Classes and sub-classes
Repetiton and Descissions
Modules and Packages
ScrumPy Model Description Language
Overview
Identifiers
Reactions
Directives
Analysis of Models With ScrumPy
The ScrumPy Modelling Environment
The Matrix Class
Fully described in utility section - enough here to understand SMs, datasets and monitors.
Anatomy of a ScrumPy Model
Kinetic Modelling
Structural Modelling
Linear Programming
Secondary Analysis of Model Results
Data sets
Fitting and Optimisation
Automatic Model Building
Bioinformatics Functions
The Utility Package