690
Comment:
|
997
|
Deletions are marked like this. | Additions are marked like this. |
Line 4: | Line 4: |
Line 6: | Line 5: |
Line 8: | Line 6: |
=== Python === |
=== Python === ==== Knowing syntax vs programming ==== ==== Inbuilt types and classes ==== ==== Classes and sub-classes ==== ==== Repetiton and Decisions ==== ==== Modules and Packages ==== |
Line 12: | Line 13: |
=== Overview === === Identifiers === === Reactions === === Directives === |
|
Line 16: | Line 20: |
Line 19: | Line 21: |
=== The Matrix Class === Fully described in utility section - enough here to understand SMs, datasets and monitors. |
|
Line 21: | Line 24: |
Line 24: | Line 25: |
Line 26: | Line 26: |
Line 28: | Line 27: |
Line 32: | Line 28: |
Line 35: | Line 29: |
Line 37: | Line 30: |
Line 39: | Line 31: |
== Structural Analysis of Models == == Kinetic Analysis of Models == |
|
Line 48: | Line 32: |
== The Utility Package == === Dynamic Matrices === |
ScrumPy Manual
Introduction
Metabolic Modelling
Design Philosophy
Python
Knowing syntax vs programming
Inbuilt types and classes
Classes and sub-classes
Repetiton and Decisions
Modules and Packages
ScrumPy Model Description Language
Overview
Identifiers
Reactions
Directives
Analysis of Models With ScrumPy
The ScrumPy Modelling Environment
The Matrix Class
Fully described in utility section - enough here to understand SMs, datasets and monitors.
Anatomy of a ScrumPy Model
Kinetic Modelling
Structural Modelling
Linear Programming
Secondary Analysis of Model Results
Data sets
Fitting and Optimisation
Automatic Model Building
Bioinformatics Functions
The Utility Package