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| ==== Repetiton and Descissions ==== | ==== Repetiton and Decisions ==== |
ScrumPy Manual
Introduction
Metabolic Modelling
Design Philosophy
Python
Knowing syntax vs programming
Inbuilt types and classes
Classes and sub-classes
Repetiton and Decisions
Modules and Packages
ScrumPy Model Description Language
Overview
Identifiers
Reactions
Directives
Analysis of Models With ScrumPy
The ScrumPy Modelling Environment
The Matrix Class
Fully described in utility section - enough here to understand SMs, datasets and monitors.
Anatomy of a ScrumPy Model
Kinetic Modelling
Structural Modelling
Linear Programming
Secondary Analysis of Model Results
Data sets
Fitting and Optimisation
Automatic Model Building
Bioinformatics Functions
The Utility Package